Evidence map›Paper›PMID 36293454›Full record

ArticleInternational journal of molecular sciences2022

Single-Cell DNA Methylation Analysis of Chicken Lampbrush Chromosomes.

Artem Nurislamov, Timofey Lagunov, Maria Gridina, Alla Krasikova, Veniamin Fishman

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Research Topics of the Bioinformatics of Gene Regulation.International journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Artem NurislamovDepartment of Natural Sciences, Novosibirsk State University, Pirogova St. 1, 630090 Novosibirsk, Russia.ORCID 0000-0002-0553-1316
Timofey LagunovInstitute of Cytology and Genetics SB RAS, Lavrentiev Avenue 10, 630090 Novosibirsk, Russia.ORCID 0000-0003-1966-5910
Maria GridinaInstitute of Cytology and Genetics SB RAS, Lavrentiev Avenue 10, 630090 Novosibirsk, Russia.
Alla KrasikovaLaboratory of The Cell Nucleus Structure and Dynamics, Cytology and Histology Department, Saint Petersburg State University, Universitetskaya Embankment 7/9, 199034 Saint Petersburg, Russia.
Veniamin FishmanDepartment of Natural Sciences, Novosibirsk State University, Pirogova St. 1, 630090 Novosibirsk, Russia.
Novosibirsk State University · RUInstitute of Cytology and Genetics · RUSt Petersburg University · RU

Funding

Ministry of Education and Science of Russian Federation #2019-0546 (FSUS-2020-0040)Russian Science Foundation 20-64-46021State project 121031800061-7
6 · The paper itself

Abstract

DNA methylation is an essential epigenetic regulation mechanism implicated in transcription and replication control, developmental reprogramming, retroelements silencing and other genomic processes. During mammalian development, a specific DNA methylation pattern should be established in germ cells to allow embryonic development. Less is known about germ cell DNA methylation in other species. To close this gap, we performed a single-cell methylome analysis of chicken diplotene oocytes. We comprehensively characterized methylation patterns in these cells, obtained methylation-based chicken genome segmentation and identified oocyte-specific methylated gene promoters. Our data show that despite the formation of specific transcriptionally hyperactive genome architecture in chicken diplotene oocytes, methylation patterns in these cells closely resemble genomic distribution observed in somatic tissues.

Indexed as

DNA MethylationEpigenesis, GeneticAnimalsChickensChromosomesMammalsOocytesRetroelementsRetroelementschicken genomechicken oocyteDNA methylationlampbrush chromosomes

Identifiers

PMID36293454
PMCPMC9604247
OpenAlexW4306920625

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.