Evidence map›Paper›PMID 36293079›Full record

ArticleInternational journal of molecular sciences2022

Transcriptome Analysis Reveals the Genes Related to Pollen Abortion in a Cytoplasmic Male-Sterile Soybean (

Zhiyuan Bai, Xianlong Ding, Ruijun Zhang, Yuhua Yang, Baoguo Wei, Shouping Yang, Junyi Gai

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Research on Plant Genomics and Breeding 2.0.International journal of molecular sciences · 2024
    Article
  5. Review
  6. Fitness and Hard Seededness of FPlants (Basel, Switzerland) · 2023
    Article
  7. Research on Plant Genomics and Breeding.International journal of molecular sciences · 2023
    Article
  8. Article
  9. Male sterility and hybrid breeding in soybean.Molecular breeding : new strategies in plant improvement · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Zhiyuan BaiSoybean Research Institute, National Center for Soybean Improvement, Key Laboratory of Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture and Rural Affairs of the People's Republic of China), State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
Xianlong DingSoybean Research Institute, National Center for Soybean Improvement, Key Laboratory of Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture and Rural Affairs of the People's Republic of China), State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
Ruijun ZhangCenter for Agricultural Genetic Resources Research, Shanxi Agricultural University, Taiyuan 030031, China.
Yuhua YangCenter for Agricultural Genetic Resources Research, Shanxi Agricultural University, Taiyuan 030031, China.
Baoguo WeiCenter for Agricultural Genetic Resources Research, Shanxi Agricultural University, Taiyuan 030031, China.
Shouping YangSoybean Research Institute, National Center for Soybean Improvement, Key Laboratory of Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture and Rural Affairs of the People's Republic of China), State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
Junyi GaiSoybean Research Institute, National Center for Soybean Improvement, Key Laboratory of Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture and Rural Affairs of the People's Republic of China), State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
Shanxi Agricultural University · CNMinistry of Agriculture and Rural Affairs · CNNanjing Agricultural University · CN

Funding

the National Key R&D Program of China 2016YFD0101500, 2016YFD0101504
6 · The paper itself

Abstract

Cytoplasmic male sterility (CMS) lays a foundation for the utilization of heterosis in soybean. The soybean CMS line SXCMS5A is an excellent CMS line exhibiting 100% male sterility. Cytological analysis revealed that in SXCMS5A compared to its maintainer SXCMS5B, its tapetum was vacuolated and abnormally developed. To identify the genes and metabolic pathways involving in pollen abortion of SXCMS5A, a comparative transcriptome analysis was conducted between SXCMS5A and SXCMS5B using flower buds. A total of 372,973,796 high quality clean reads were obtained from 6 samples (3 replicates for each material), and 840 differentially expressed genes (DEGs) were identified, including 658 downregulated and 182 upregulated ones in SXCMS5A compared to SXCMS5B. Among them, 13 DEGs, i.e., 12 open reading frames (ORFs) and 1

Indexed as

Glycine maxPlant InfertilityAdenosine TriphosphateAscorbic AcidCatalaseCyclooxygenase 2CytoplasmFlowersGene Expression ProfilingGene Expression Regulation, PlantPollenReactive Oxygen SpeciesSugarsTranscription FactorsTranscriptomeAdenosine TriphosphateAscorbic AcidCatalaseCyclooxygenase 2Reactive Oxygen SpeciesSugarsTranscription Factorscytoplasmic male sterilitygene expressionpollen abortionRNA sequencingsoybean (Glycine max (L.) Merr.)

Identifiers

PMID36293079
PMCPMC9603564
OpenAlexW4306152193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.