Evidence map›Paper›PMID 36292679›Full record

ArticleGenes2022

Profiling Genome-Wide DNA Methylation in Children with Autism Spectrum Disorder and in Children with Fragile X Syndrome.

Mittal Jasoliya, Jianlei Gu, Reem R AlOlaby, Blythe Durbin-Johnson, Frederic Chedin, Flora Tassone

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mittal JasoliyaBiochemistry and Molecular Medicine, University of California, Sacramento, CA 95817, USA.ORCID 0000-0002-5841-2927
Jianlei GuSchool of Public Health: Biostatistics, Yale University, New Haven, CT 06510, USA.
Reem R AlOlabyCollege of Health Sciences, California Northstate University, Sacramento, CA 95757, USA.
Blythe Durbin-JohnsonDepartment of Public Health Sciences, Division of Biostatistics, University of California, Davis, CA 95616, USA.
Frederic ChedinDavis, Genome Center, University of California, Davis, CA 95616, USA.
Flora TassoneBiochemistry and Molecular Medicine, University of California, Sacramento, CA 95817, USA.ORCID 0000-0002-6388-9180
University of California, Davis · USCalifornia Northstate University · USYale University · US

Funding

UC Davis Clinical and Translational Science CenterUL1TR001860 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KENYON, NICHOLAS J., LYLES, COURTNEY REES · 2016 to 2025
$47.3M
Research Project: Pathologic Significance of Maternal AutoantibodiesP50HD103526 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEONARD J. ABBEDUTO, Melissa Dawn Bauman · 2020 to 2026
$9.7M
Epigenetic regulation of the FMR1 geneR01GM113929 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEDIN, FREDERIC LOUIS, HAGERMAN, PAUL J · 2015 to 2018
$1.9M
National Institute of Health GM113929-01NCATS NIH HHS UL1 TR001860NCATS NIH HHS UL1TR001860NICHD NIH HHS P50 HD103526NICHD NIH HHS P50HD103526NIGMS NIH HHS R01 GM113929
6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is an early onset, developmental disorder whose genetic cause is heterogeneous and complex. In total, 70% of ASD cases are due to an unknown etiology. Among the monogenic causes of ASD, fragile X syndrome (FXS) accounts for 2-4% of ASD cases, and 60% of individuals with FXS present with ASD. Epigenetic changes, specifically DNA methylation, which modulates gene expression levels, play a significant role in the pathogenesis of both disorders. Thus, in this study, using the Human Methylation EPIC Bead Chip, we examined the global DNA methylation profiles of biological samples derived from 57 age-matched male participants (2-6 years old), including 23 subjects with ASD, 23 subjects with FXS with ASD (FXSA) and 11 typical developing (TD) children. After controlling for technical variation and white blood cell composition, using the conservatory threshold of the false discovery rate (FDR ≤ 0.05), in the three comparison groups, TD vs. AD, TD vs. FXSA and ASD vs. FXSA, we identified 156, 79 and 3100 differentially methylated sites (DMS), and 14, 13 and 263 differential methylation regions (DMRs). Interestingly, several genes differentially methylated among the three groups were among those listed in the SFARI Gene database, including the

Indexed as

Autism Spectrum DisorderFragile X SyndromeTranscription Factors, TFIIIChildChild, PreschoolDNA MethylationEpigenesis, GeneticForkhead Transcription FactorsHumansMaleRepressor ProteinsForkhead Transcription FactorsFOXP1 protein, humanRepressor ProteinsTranscription Factors, TFIIIautism spectrum disorderCpGDNA methylationepigeneticfragile X syndrome

Identifiers

PMID36292679
PMCPMC9602177
OpenAlexW4303685771

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.