Evidence map›Paper›PMID 36291136›Full record

ArticleCells2022

Key Genes Associated with Pyroptosis in Gout and Construction of a miRNA-mRNA Regulatory Network.

Bing Bai, Yezhou Liu, Azierguli Abudukerimu, Tingting Tian, Meiting Liang, Rui Li, Yuping Sun

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Bing BaiSchool of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Yezhou LiuSchool of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Azierguli AbudukerimuDepartment of Microbiology, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Tingting TianSchool of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Meiting LiangSchool of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Rui LiSchool of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Yuping SunDepartment of Microbiology, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi 830017, China.
Xinjiang Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to analyze key hub genes related to pyroptosis in gout and construct a miRNA-mRNA regulatory network using bioinformatic tools to elucidate the pathogenesis of gout and offer novel ideas to develop targeted therapeutic strategies for gout.

methodsThe GSE160170 dataset was downloaded from the GEO database. The expression data extracted from the dataset were used to screen for differentially expressed genes (DEGs), which intersected with pyroptosis-related genes. These DEGs were analyzed via Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses, and a protein-protein interaction (PPI) network was constructed to identify pyroptosis-related hub DEGs. The relationship between upstream miRNAs and the hub genes was analyzed, miRNA-mRNA networks belonging to gout disease were constructed and samples from patients with gout were used for experimental verification. The CTDbase tool was used to analyze the identified hub genes and construct a molecular docking model.

resultsA total of 943 DEGs (380 upregulated and 563 downregulated) were identified by analyzing the data of patients with early-stage gout and healthy control individuals in the GSE160170 dataset. DEGs and pyroptosis-related genes were intersected to obtain 17 pyroptosis-related DEGs associated with gout; of which, 12 were upregulated, and five were downregulated. The results of GO and KEGG analyses revealed that the DEGs were enriched in inflammatory and immune signaling pathways. Additionally, the DEGs were found to regulate inflammatory responses and were associated with apoptosis.

conclusionA miRNA-mRNA potential regulatory network was constructed based on pyroptosis-related DEGs associated with gout. miR-16-5p, miR-128-3p, miR-20a-5p, and miR-155-5p can potentially influence pyroptosis and the occurrence and development of gout by affecting the expression of the

Indexed as

Gene Regulatory NetworksGoutMicroRNAsPyroptosisBiomarkersCelecoxibCyclooxygenase 2Gene Expression ProfilingHumansMolecular Docking SimulationNLR Family, Pyrin Domain-Containing 3 ProteinResveratrolRNA, MessengerBiomarkersCelecoxibCyclooxygenase 2MicroRNAsNLR Family, Pyrin Domain-Containing 3 ProteinResveratrolRNA, MessengergoutinflammationmicroRNApyroptosis

Identifiers

PMID36291136
PMCPMC9600917
OpenAlexW4306651405

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.