Evidence map›Paper›PMID 36289450›Full record

ArticleNature immunology2022

Divergent clonal differentiation trajectories of T cell exhaustion.

Bence Daniel, Kathryn E Yost, Sunnie Hsiung, Katalin Sandor, Yu Xia, Yanyan Qi, Kamir J Hiam-Galvez, Mollie Black, Colin J Raposo, Quanming Shi and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 208 citations in OpenAlex.

  1. Trial
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Spatiotemporal CD8Cancer science · 2026
    Review
  9. Review
  10. Article
  11. Decoding T cell exhaustion in the tumour microenvironment.Experimental & molecular medicine · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Selective impact on regulatory T cells with sustained functional phenotypes by the interleukin-2 mutein VIS171 in a nonhuman primate model.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
    Article
  17. Cell Cycle Sensing Shapes Human T Cell Fate and Exhaustion Programs.bioRxiv : the preprint server for biology · 2026
    Article
  18. Article
  19. Article
  20. Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Bence Daniel *Department of Pathology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-2410-8767
Kathryn E Yost *Center for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA.
Sunnie Hsiung *Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-4813-7220
Katalin SandorDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-2892-4865
Yu XiaDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Yanyan QiDepartment of Pathology, Stanford University, Stanford, CA, USA.
Kamir J Hiam-GalvezDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-1956-0257
Mollie BlackDepartment of Pathology, Stanford University, Stanford, CA, USA.
Colin J RaposoDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-5230-7931
Quanming ShiDepartment of Pathology, Stanford University, Stanford, CA, USA.
Stefanie L MeierDepartment of Pathology, Stanford University, Stanford, CA, USA.
Julia A BelkDepartment of Pathology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-4724-6158
Josephine R GilesDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.
E John WherryDepartment of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-0477-1956
Howard Y ChangCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9459-4393
Takeshi EgawaDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0001-7489-1051
Ansuman T SatpathyDepartment of Pathology, Stanford University, Stanford, CA, USA. satpathy@stanford.edu.ORCID http://orcid.org/0000-0002-5167-537X
Gladstone Institutes · USStanford University · USWashington University in St. Louis · USParker Institute for Cancer Immunotherapy · USHoward Hughes Medical Institute · US

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
IMMUNOBIOLOGY OF NORMAL AND NEOPLASTIC LYMPHOCYTEST32CA009140 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Malay Haldar, WARREN S PEAR · 1985 to 2026
$16.1M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
The transcription factor c-MYC in lymphocyte expansion and restriction of stemnessR01AI130152 · NIAID · WASHINGTON UNIVERSITY · PI Takeshi Egawa · 2017 to 2026
$4.6M
4DN Interrogation of T Cell Exhaustion in CancerU01CA260852 · NCI · STANFORD UNIVERSITY · PI SATPATHY, ANSUMAN · 2020 to 2024
$2.6M
High Throughput DNA Sequencer UpgradeS10OD018220 · OD · STANFORD UNIVERSITY · PI COLLER, JOHN · 2014 to 2014
$596k
Computer ClusterS10OD021763 · OD · STANFORD UNIVERSITY · PI JI, HANLEE P · 2016 to 2016
$481k
Single cell epigenomics in cancer immunity and immunotherapyK08CA230188 · NCI · STANFORD UNIVERSITY · PI SATPATHY, ANSUMAN · 2018 to 2020
$448k
Identification of progenitor CD4 T cells that support response to chronic antigenR21AI161040 · NIAID · WASHINGTON UNIVERSITY · PI EGAWA, TAKESHI · 2021 to 2022
$433k
Tumor and Immune Cell Dynamics during Immunotherapy and Cancer ProgressionF99CA253729 · NCI · STANFORD UNIVERSITY · PI YOST, KATHRYN ELIZABETH · 2020 to 2020
$39k
Howard Hughes Medical InstituteNCI NIH HHS F99 CA253729NCI NIH HHS K08 CA230188NCI NIH HHS T32 CA009140NCI NIH HHS U01 CA260852NHGRI NIH HHS RM1 HG007735NIAID NIH HHS R01 AI130152NIAID NIH HHS R21 AI161040NIAID NIH HHS T32 AI007290NIH HHS S10 OD018220NIH HHS S10 OD021763
6 · The paper itself

Abstract

Chronic antigen exposure during viral infection or cancer promotes an exhausted T cell (Tex) state with reduced effector function. However, whether all antigen-specific T cell clones follow the same Tex differentiation trajectory remains unclear. Here, we generate a single-cell multiomic atlas of T cell exhaustion in murine chronic viral infection that redefines Tex phenotypic diversity, including two late-stage Tex subsets with either a terminal exhaustion (Tex

Indexed as

CD8-Positive T-LymphocytesVirus DiseasesAnimalsCell DifferentiationHumansLymphocytes, Tumor-InfiltratingMiceReceptors, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID36289450
PMCPMC11225711
OpenAlexW4307429713

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.