Evidence map›Paper›PMID 36289397›Full record

ArticleNature microbiology2022

Evasion of cGAS and TRIM5 defines pandemic HIV.

Lorena Zuliani-Alvarez, Morten L Govasli, Jane Rasaiyaah, Chris Monit, Stephen O Perry, Rebecca P Sumner, Simon McAlpine-Scott, Claire Dickson, K M Rifat Faysal, Laura Hilditch and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
  2. CypA is a molecular barrier to HIV emergence from Eastern chimpanzees.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
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  12. Review
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  17. Unintegrated HIV-1 DNA recruits cGAS via its histone-binding domain to escape innate immunity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Article
  20. Linking innate immune evasion to pandemic potential.Nature reviews. Microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 5 countries.

Lorena Zuliani-AlvarezDivision of Infection and Immunity, UCL, London, UK.ORCID 0000-0002-4682-4043
Morten L GovasliDivision of Infection and Immunity, UCL, London, UK.
Jane RasaiyaahDivision of Infection and Immunity, UCL, London, UK.
Chris MonitDivision of Infection and Immunity, UCL, London, UK.
Stephen O PerryDivision of Infection and Immunity, UCL, London, UK.
Rebecca P SumnerDivision of Infection and Immunity, UCL, London, UK.
Simon McAlpine-ScottDivision of Infection and Immunity, UCL, London, UK.
Claire DicksonEMBL Australia Node in Single Molecule Science, School of Medical Sciences, UNSW Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-1972-4143
K M Rifat FaysalEMBL Australia Node in Single Molecule Science, School of Medical Sciences, UNSW Sydney, Sydney, New South Wales, Australia.
Laura HilditchDivision of Infection and Immunity, UCL, London, UK.
Richard J MilesDivision of Infection and Immunity, UCL, London, UK.
Frederic Bibollet-RucheDepartment of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Beatrice H HahnDepartment of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-9400-9887
Till BoeckingEMBL Australia Node in Single Molecule Science, School of Medical Sciences, UNSW Sydney, Sydney, New South Wales, Australia.ORCID 0000-0003-1165-3122
Nikos PinotsisInstitute of Structural and Molecular Biology, Birkbeck College, London, UK.ORCID 0000-0002-5096-257X
Leo C JamesMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0003-2131-0334
David A JacquesEMBL Australia Node in Single Molecule Science, School of Medical Sciences, UNSW Sydney, Sydney, New South Wales, Australia. d.jacques@unsw.edu.au.ORCID 0000-0002-6426-4510
Greg J TowersDivision of Infection and Immunity, UCL, London, UK. g.towers@ucl.ac.uk.ORCID 0000-0002-7707-0264
University College London · GBUNSW Sydney · AUUniversity of Pennsylvania · USFarr Institute · GBGlobal College · CYInstitute of Infection and Immunity · CAInstitute of Structural and Molecular Biology · GBMRC Laboratory of Molecular Biology · GBUK Research and Innovation · GBUniversity of California, San Francisco · US

Funding

Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Studies of the precursor of the human AIDS virus in its natural chimpanzee hostR01AI120810 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2016 to 2020
$3.4M
Department of HealthMedical Research Council G0801172Medical Research Council MC_U105181010Medical Research Council MR/S023380/1Medical Research Council U105181010NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI120810Wellcome TrustWellcome Trust 108183Wellcome Trust 200594/Z/16/ZWellcome Trust 214344Wellcome Trust 220863
6 · The paper itself

Abstract

Of the 13 known independent zoonoses of simian immunodeficiency viruses to humans, only one, leading to human immunodeficiency virus (HIV) type 1(M) has become pandemic, causing over 80 million human infections. To understand the specific features associated with pandemic human-to-human HIV spread, we compared replication of HIV-1(M) with non-pandemic HIV-(O) and HIV-2 strains in myeloid cell models. We found that non-pandemic HIV lineages replicate less well than HIV-1(M) owing to activation of cGAS and TRIM5-mediated antiviral responses. We applied phylogenetic and X-ray crystallography structural analyses to identify differences between pandemic and non-pandemic HIV capsids. We found that genetic reversal of two specific amino acid adaptations in HIV-1(M) enables activation of TRIM5, cGAS and innate immune responses. We propose a model in which the parental lineage of pandemic HIV-1(M) evolved a capsid that prevents cGAS and TRIM5 triggering, thereby allowing silent replication in myeloid cells. We hypothesize that this capsid adaptation promotes human-to-human spread through avoidance of innate immune response activation.

Indexed as

HIV-1HIV InfectionsSimian Immunodeficiency VirusAnimalsAntiviral Restriction FactorsCapsidHumansNucleotidyltransferasesPhylogenyTripartite Motif ProteinsUbiquitin-Protein LigasesAntiviral Restriction FactorsNucleotidyltransferasesTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID36289397
PMCPMC9613477
OpenAlexW4307775050

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.