Evidence map›Paper›PMID 36289323›Full record

ArticleCommunications biology2022

Intron turnover is essential to the development and pathogenicity of the plant pathogenic fungus Fusarium graminearum.

Yejin Choi, Hyun-Hee Lee, Jiyeun Park, Sieun Kim, Soyoung Choi, Heeji Moon, Jiyoung Shin, Jung-Eun Kim, Gyung Ja Choi, Young-Su Seo and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Yejin ChoiDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea.
Hyun-Hee LeeDepartment of Integrated Biological Science, Pusan National University, Busan, 46247, Republic of Korea.
Jiyeun ParkDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea.ORCID 0000-0003-1179-4574
Sieun KimDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea.
Soyoung ChoiDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea.
Heeji MoonDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea.
Jiyoung ShinResearch Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Jung-Eun KimResearch Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.ORCID 0000-0002-5173-9134
Gyung Ja ChoiTherapeutic & Biotechnology Division, Center for Eco-friendly New Materials, Korea Research Institute of Chemical Technology, Daejeon, 34114, Republic of Korea.
Young-Su SeoDepartment of Integrated Biological Science, Pusan National University, Busan, 46247, Republic of Korea.
Hokyoung SonDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea. hogongi7@snu.ac.kr.ORCID 0000-0001-5080-7951
Seoul National University · KRPusan National University · KRKorea Research Institute of Chemical Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intron lariats excised during the splicing process are rapidly degraded by RNA lariat debranching enzyme (Dbr1) and several exonucleases. Rapid turnover of lariat RNA is essential to cellular RNA homeostasis. However, the functions of Dbr1 have not been investigated in filamentous fungi. Here, we characterized the molecular functions of Dbr1 in Fusarium graminearum, a major fungal plant pathogen. Deletion of FgDBR1 resulted in pleiotropic defects in hyphal growth, conidiation, sexual reproduction, and virulence. Through transcriptome analysis, we revealed that the deletion mutant exhibited global accumulation of intron lariats and upregulation of ribosome-related genes. Excessive accumulation of lariat RNA led to reduced overall protein synthesis, causing various phenotypic defects in the absence of FgDBR1. The results of this study demonstrate that a compromised intron turnover process affects development and pathogenesis in this fungus and that Dbr1 function is critical to plant pathogenic fungi.

Indexed as

ExonucleasesRNAIntronsVirulenceExonucleasesRNA

Identifiers

PMID36289323
PMCPMC9606315
OpenAlexW4307659016

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.