Evidence map›Paper›PMID 36288714›Full record

ArticleCell reports2022

Genome-wide CRISPR screen reveals v-ATPase as a drug target to lower levels of ALS protein ataxin-2.

Garam Kim, Lisa Nakayama, Jacob A Blum, Tetsuya Akiyama, Steven Boeynaems, Meenakshi Chakraborty, Julien Couthouis, Eduardo Tassoni-Tsuchida, Caitlin M Rodriguez, Michael C Bassik and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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  8. Rare association between spinocerebellar ataxia and amyotrophic lateral sclerosis: a case series.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Garam KimDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA; Stanford Neurosciences Interdepartmental Program, Stanford University School of Medicine, Stanford, CA 94305, USA.
Lisa NakayamaDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jacob A BlumDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA; Stanford Neurosciences Interdepartmental Program, Stanford University School of Medicine, Stanford, CA 94305, USA.
Tetsuya AkiyamaDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Steven BoeynaemsDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Meenakshi ChakrabortyDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Julien CouthouisDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Eduardo Tassoni-TsuchidaDepartment of Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Caitlin M RodriguezDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Michael C BassikDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Aaron D GitlerDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: agitler@stanford.edu.
Stanford University · USStanford Medicine · US

Funding

Stanford Islet Research CoreP30DK116074 · NIDDK · STANFORD UNIVERSITY · PI Seung K Kim · 2017 to 2026
$19.5M
Training Program in Basic NeuroscienceT32MH020016 · NIMH · STANFORD UNIVERSITY · PI Justin L Gardner, Merritt C Maduke · 1997 to 2026
$16.2M
Innovating Yeast and Human Genetics Approaches to Define Mechanisms of Neurodegenerative DiseaseR35NS097263 · NINDS · STANFORD UNIVERSITY · PI GITLER, AARON D. · 2017 to 2024
$8.6M
Stanford Training Program in Aging ResearchT32AG047126 · NIA · STANFORD UNIVERSITY · PI VYJEYANTHI S PERIYAKOIL, TONY WYSS-CORAY · 2014 to 2026
$4.3M
Defining modifiers and mechanisms of RAN translationRF1AG064690 · NIA · STANFORD UNIVERSITY · PI GITLER, AARON D., PUGLISI, JOSEPH D · 2019 to 2019
$2.8M
Defining modifiers and mechanisms of RAN translationR01AG064690 · NIA · STANFORD UNIVERSITY · PI Aaron D. Gitler, JOSEPH D PUGLISI · 2024 to 2026
$2.3M
Ultra high throughput sequencer for sustaining and enhancing multi-scale genomic studiesS10OD025212 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2018 to 2018
$600k
Deciphering the role of Ataxin-2 in amyotrophic lateral sclerosisF32NS116208 · NINDS · STANFORD UNIVERSITY · PI RODRIGUEZ, CAITLIN MARIE · 2020 to 2021
$168k
A Novel Genome-Wide Screen to Identify and Characterize Regulators of ALS Disease Modifier Gene Ataxin-2F31NS125681 · NINDS · STANFORD UNIVERSITY · PI KIM, GARAM · 2022 to 2022
$47k
NIA NIH HHS R01 AG064690NIA NIH HHS RF1 AG064690NIA NIH HHS T32 AG047126NIDDK NIH HHS P30 DK116074NIH HHS S10 OD025212NIMH NIH HHS T32 MH020016NINDS NIH HHS F31 NS125681NINDS NIH HHS F32 NS116208NINDS NIH HHS R35 NS097263
6 · The paper itself

Abstract

Mutations in the ataxin-2 gene (ATXN2) cause the neurodegenerative disorders amyotrophic lateral sclerosis (ALS) and spinocerebellar ataxia type 2 (SCA2). A therapeutic strategy using antisense oligonucleotides targeting ATXN2 has entered clinical trial in humans. Additional ways to decrease ataxin-2 levels could lead to cheaper or less invasive therapies and elucidate how ataxin-2 is normally regulated. Here, we perform a genome-wide fluorescence-activated cell sorting (FACS)-based CRISPR-Cas9 screen in human cells and identify genes encoding components of the lysosomal vacuolar ATPase (v-ATPase) as modifiers of endogenous ataxin-2 protein levels. Multiple FDA-approved small molecule v-ATPase inhibitors lower ataxin-2 protein levels in mouse and human neurons, and oral administration of at least one of these drugs-etidronate-is sufficient to decrease ataxin-2 in the brains of mice. Together, we propose v-ATPase as a drug target for ALS and SCA2 and demonstrate the value of FACS-based screens in identifying genetic-and potentially druggable-modifiers of human disease proteins.

Indexed as

Amyotrophic Lateral SclerosisSpinocerebellar AtaxiasVacuolar Proton-Translocating ATPasesAnimalsAtaxin-2Etidronic AcidHumansMiceOligonucleotides, AntisensePharmaceutical PreparationsAtaxin-2Etidronic AcidOligonucleotides, AntisensePharmaceutical PreparationsVacuolar Proton-Translocating ATPasesALSataxin-2bisphosphonateCP: NeuroscienceetidronateFACSgenetic screensSCA2small-molecule therapyTDP-43v-ATPase

Identifiers

PMID36288714
PMCPMC9664452
OpenAlexW4307584736

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.