Evidence map›Paper›PMID 36284108›Full record

ArticleNature communications2022

Cell-specific bioorthogonal tagging of glycoproteins.

Anna Cioce, Beatriz Calle, Tatiana Rizou, Sarah C Lowery, Victoria L Bridgeman, Keira E Mahoney, Andrea Marchesi, Ganka Bineva-Todd, Helen Flynn, Zhen Li and 21 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Iterative Bump-and-Hole Engineering Creates a Bioorthogonal Reporter forJournal of the American Chemical Society · 2026
    Article
  6. Bifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments.Chembiochem : a European journal of chemical biology · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Iterative Bump-and-hole engineering creates a bioorthogonal reporter forbioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. MUC15 Ectodomain Architecture Regulates Integrin Clustering to Control Cancer Metastasis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  14. Reconstituting alternative life using the test-bed of cell-free systems.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. A Bioorthogonal Precision Tool for HumanJournal of the American Chemical Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 6 institutions in 4 countries.

Anna CioceDepartment of Chemistry, Imperial College London, London, W12 0BZ, UK.ORCID 0000-0001-7284-1712
Beatriz CalleDepartment of Chemistry, Imperial College London, London, W12 0BZ, UK.ORCID 0000-0002-9893-9803
Tatiana Rizou *Tumour-Host Interaction Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.
Sarah C Lowery *Department of Chemistry, Yale University, New Haven, CT 06511, USA.
Victoria L Bridgeman *Tumour-Host Interaction Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.
Keira E Mahoney *Department of Chemistry, Yale University, New Haven, CT 06511, USA.ORCID 0000-0003-4561-9838
Andrea MarchesiDepartment of Chemistry, Imperial College London, London, W12 0BZ, UK.
Ganka Bineva-ToddChemical Glycobiology Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.
Helen FlynnProteomics Science Technology Platform, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0001-7002-9130
Zhen LiDepartment of Chemistry, Imperial College London, London, W12 0BZ, UK.
Omur Y TastanChemical Glycobiology Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.
Chloe RoustanStructural Biology Science Technology Platform, The Francis Crick Institute, London, NW1 1AT, UK.
Pablo Soro-BarrioBioinformatics & Biostatistics Science Technology Platform, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0003-4509-6109
Mahmoud-Reza RafieeRNA Networks Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.
Acely Garza-GarciaMycobacterial Metabolism and Antibiotic Research Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0003-0307-0138
Aristotelis AntonopoulosDepartment of Life Sciences, Imperial College London, London, SW7 2AZ, UK.ORCID 0000-0002-1592-4092
Thomas M WoodSarafan ChEM-H, Department of Chemistry and Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.
Tessa KeenanDepartment of Chemistry, University of York, York, YO10 5DD, UK.ORCID 0000-0003-2466-6918
Peter BothSchool of Chemistry & Institute of Biotechnology, The University of Manchester, Manchester, M1 7DN, UK.
Kun HuangSchool of Chemistry & Institute of Biotechnology, The University of Manchester, Manchester, M1 7DN, UK.
Fabio ParmeggianSchool of Chemistry & Institute of Biotechnology, The University of Manchester, Manchester, M1 7DN, UK.ORCID 0000-0001-5861-9269
Ambrosius P SnijdersProteomics Science Technology Platform, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-5416-8592
Mark SkehelProteomics Science Technology Platform, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-2432-0901
Svend KjærStructural Biology Science Technology Platform, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0001-9767-8683
Martin A FascioneDepartment of Chemistry, University of York, York, YO10 5DD, UK.ORCID 0000-0002-0066-4419
Carolyn R BertozziSarafan ChEM-H, Department of Chemistry and Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-4482-2754
Stuart M HaslamDepartment of Life Sciences, Imperial College London, London, SW7 2AZ, UK.ORCID 0000-0002-5563-679X
Sabine L FlitschSchool of Chemistry & Institute of Biotechnology, The University of Manchester, Manchester, M1 7DN, UK.ORCID 0000-0003-3974-646X
Stacy A MalakerDepartment of Chemistry, Yale University, New Haven, CT 06511, USA.ORCID 0000-0003-2382-5067
Ilaria MalanchiTumour-Host Interaction Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0003-4867-3311
Benjamin SchumannDepartment of Chemistry, Imperial College London, London, W12 0BZ, UK. b.schumann@imperial.ac.uk.ORCID 0000-0001-5504-0147
The Francis Crick Institute · GBUniversity of Manchester · GBYale University · USHoward Hughes Medical Institute · USImperial College London · GBUniversity of York · GB

Funding

Predoc Training at the Interface Chemistry and BiologyT32GM067543 · NIGMS · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2003 to 2022
$7.4M
Investigating the Surface GlycoproteomeR01CA200423 · NCI · STANFORD UNIVERSITY · PI Carolyn Bertozzi · 2015 to 2026
$3.8M
Toward understanding the role of altered glycosylation in cancerR35GM147039 · NIGMS · YALE UNIVERSITY · PI Stacy Alyse Malaker · 2022 to 2026
$2.0M
Biotechnology and Biological Sciences Research Council BB/M027791/1Biotechnology and Biological Sciences Research Council BB/M02847X/1Biotechnology and Biological Sciences Research Council BB/M028836/1Biotechnology and Biological Sciences Research Council BB/T01279X/1Biotechnology and Biological Sciences Research Council EP/S005226/1Biotechnology and Biological Sciences Research Council EP/S013741/1NCI NIH HHS R01 CA200423NIGMS NIH HHS R35 GM147039NIGMS NIH HHS T32 GM067543Wellcome Trust 218304/Z/19/ZWellcome Trust FC001045Wellcome Trust FC001060Wellcome Trust FC001112Wellcome Trust FC001749
6 · The paper itself

Abstract

Altered glycoprotein expression is an undisputed corollary of cancer development. Understanding these alterations is paramount but hampered by limitations underlying cellular model systems. For instance, the intricate interactions between tumour and host cannot be adequately recapitulated in monoculture of tumour-derived cell lines. More complex co-culture models usually rely on sorting procedures for proteome analyses and rarely capture the details of protein glycosylation. Here, we report a strategy termed Bio-Orthogonal Cell line-specific Tagging of Glycoproteins (BOCTAG). Cells are equipped by transfection with an artificial biosynthetic pathway that transforms bioorthogonally tagged sugars into the corresponding nucleotide-sugars. Only transfected cells incorporate bioorthogonal tags into glycoproteins in the presence of non-transfected cells. We employ BOCTAG as an imaging technique and to annotate cell-specific glycosylation sites in mass spectrometry-glycoproteomics. We demonstrate application in co-culture and mouse models, allowing for profiling of the glycoproteome as an important modulator of cellular function.

Indexed as

ProteomeProteomicsAnimalsGlycoproteinsMiceNucleotidesSugarsGlycoproteinsNucleotidesProteomeSugars

Identifiers

PMID36284108
PMCPMC9596482
OpenAlexW4307391362

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.