Evidence map›Paper›PMID 36282593›Full record

ArticleJCI insight2022

Consecutive BNT162b2 mRNA vaccination induces short-term epigenetic memory in innate immune cells.

Yuta Yamaguchi, Yasuhiro Kato, Ryuya Edahiro, Jonas N Søndergaard, Teruaki Murakami, Saori Amiya, Shinichiro Nameki, Yuko Yoshimine, Takayoshi Morita, Yusuke Takeshima and 13 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 55 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Immunology of RNA-based vaccines: The critical interplay between inflammation and expression.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 4 countries.

Yuta YamaguchiImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Yasuhiro KatoImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Ryuya EdahiroDepartment of Respiratory Medicine and Clinical Immunology and.
Jonas N SøndergaardHuman Immunology Team, Center for Infectious Diseases Education and Research.
Teruaki MurakamiImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Saori AmiyaImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Shinichiro NamekiImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Yuko YoshimineImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Takayoshi MoritaImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Yusuke TakeshimaLaboratory of Experimental Immunology, WPI Immunology Frontier Research Center.
Shuhei SakakibaraLaboratory of Immune Regulation, WPI Immunology Frontier Research Center.
Yoko NaitoGenome Information Research Center, Research Institute for Microbial Diseases.
Daisuke MotookaGenome Information Research Center, Research Institute for Microbial Diseases.
Yu-Chen LiuSingle Cell Genomics, Human Immunology, WPI Immunology Frontier Research Center.
Yuya ShiraiDepartment of Respiratory Medicine and Clinical Immunology and.
Yasutaka OkitaImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Jun FujimotoImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
Haruhiko HirataDepartment of Respiratory Medicine and Clinical Immunology and.
Yoshito TakedaDepartment of Respiratory Medicine and Clinical Immunology and.
James B WingHuman Immunology Team, Center for Infectious Diseases Education and Research.
Daisuke OkuzakiGenome Information Research Center, Research Institute for Microbial Diseases.
Yukinori OkadaDepartment of Statistical Genetics, Osaka University Graduate School of Medicine, Suita, Japan.
Atsushi KumanogohImmunopathology, WPI Immunology Frontier Research Center, Osaka University, Suita, Japan.
The University of Osaka · JPNational Human Genome Research Institute · USUnited States Department of Health and Human Services · USID Genomics (United States) · USImmune Regulation (United Kingdom) · GBInstitute of Immunology · HRJapan Agency for Medical Research and Development · JPRIKEN Center for Integrative Medical Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Consecutive mRNA vaccinations against SARS-CoV-2 reinforced both innate and adaptive immune responses. However, it remains unclear whether the enhanced innate immune responses are mediated by epigenetic regulation and, if so, whether these effects persist. Using mass cytometry, RNA-Seq, and ATAC-Seq, we show that BNT162b2 mRNA vaccination upregulated antiviral and IFN-stimulated gene expression in monocytes with greater effects after the second vaccination than those after the first vaccination. Transcription factor-binding motif analysis also revealed enriched IFN regulatory factors and PU.1 motifs in accessible chromatin regions. Importantly, although consecutive BNT162b2 mRNA vaccinations boosted innate immune responses and caused epigenetic changes in isolated monocytes, we show that these effects occurred only transiently and disappeared 4 weeks after the second vaccination. Furthermore, single-cell RNA-Seq analysis revealed that a similar gene signature was impaired in the monocytes of unvaccinated patients with COVID-19 with acute respiratory distress syndrome. These results reinforce the importance of the innate immune response in the determination of COVID-19 severity but indicate that, unlike adaptive immunity, innate immunity is not unexpectedly sustained even after consecutive vaccination. This study, which focuses on innate immune memory, may provide novel insights into the vaccine development against infectious diseases.

Indexed as

BNT162 VaccineCOVID-19Epigenesis, GeneticEpigenetic MemoryHumansImmunity, InnateRNA, MessengerSARS-CoV-2BNT162 VaccineRNA, MessengerCellular immune responseCOVID-19EpigeneticsInnate immunityVaccines

Identifiers

PMID36282593
PMCPMC9746816
OpenAlexW4307210282

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.