Evidence map›Paper›PMID 36281581›Full record

ArticleThe EMBO journal2022

The E3 ubiquitin ligase RNF115 regulates phagosome maturation and host response to bacterial infection.

Orsolya Bilkei-Gorzo, Tiaan Heunis, José Luis Marín-Rubio, Francesca Romana Cianfanelli, Benjamin Bernard Armando Raymond, Joseph Inns, Daniela Fabrikova, Julien Peltier, Fiona Oakley, Ralf Schmid and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  4. Review
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  6. SMURF2 inhibits autophagic control ofbioRxiv : the preprint server for biology · 2025
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  17. Isolation of Polystyrene Bead-Induced Phagosomes for Western Blotting.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Orsolya Bilkei-GorzoWallenberg Centre for Molecular and Translational Medicine, Department of Microbiology and Immunology at Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0002-0732-7300
Tiaan HeunisBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
José Luis Marín-RubioBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID 0000-0002-7682-0190
Francesca Romana CianfanelliBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID 0000-0002-4570-1877
Benjamin Bernard Armando RaymondBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID 0000-0003-3610-9289
Joseph InnsBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID 0000-0001-6761-4179
Daniela FabrikovaWallenberg Centre for Molecular and Translational Medicine, Department of Microbiology and Immunology at Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.
Julien PeltierMRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, UK.
Fiona OakleyBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID 0000-0001-8692-1836
Ralf SchmidLeicester Institute of Structural and Chemical Biology, University of Leicester, Leicester, UK.ORCID 0000-0002-0203-4023
Anetta HärtlovaWallenberg Centre for Molecular and Translational Medicine, Department of Microbiology and Immunology at Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0002-8152-4361
Matthias TrostMRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, UK.ORCID 0000-0002-5732-700X
Newcastle University · GBUniversity of Dundee · GBNewcastle College · GBUniversity of Leicester · GBWallenberg Wood Science Center · SE

Funding

Medical Research Council MC_UU_12016/5Medical Research Council MR/K001949/1Medical Research Council MR/K0019494/1Medical Research Council MR/R023026/1Wellcome TrustWellcome Trust 215542/Z/19/Z
6 · The paper itself

Abstract

Phagocytosis is a key process in innate immunity and homeostasis. After particle uptake, newly formed phagosomes mature by acquisition of endolysosomal enzymes. Macrophage activation by interferon gamma (IFN-γ) increases microbicidal activity, but delays phagosomal maturation by an unknown mechanism. Using quantitative proteomics, we show that phagosomal proteins harbour high levels of typical and atypical ubiquitin chain types. Moreover, phagosomal ubiquitylation of vesicle trafficking proteins is substantially enhanced upon IFN-γ activation of macrophages, suggesting a role in regulating phagosomal functions. We identified the E3 ubiquitin ligase RNF115, which is enriched on phagosomes of IFN-γ activated macrophages, as an important regulator of phagosomal maturation. Loss of RNF115 protein or ligase activity enhanced phagosomal maturation and increased cytokine responses to bacterial infection, suggesting that both innate immune signalling from the phagosome and phagolysosomal trafficking are controlled through ubiquitylation. RNF115 knock-out mice show less tissue damage in response to S. aureus infection, indicating a role of RNF115 in inflammatory responses in vivo. In conclusion, RNF115 and phagosomal ubiquitylation are important regulators of innate immune functions during bacterial infections.

Indexed as

Bacterial InfectionsPhagosomesUbiquitin-Protein LigasesAnimalsInterferon-gammaMicePhagocytosisStaphylococcus aureusInterferon-gammaRnf115 protein, mouseUbiquitin-Protein LigasesE3 ligasemacrophagephagosomeRNF115ubiquitin

Identifiers

PMID36281581
PMCPMC9713710
OpenAlexW4307233912

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.