Evidence map›Paper›PMID 36281292›Full record

ArticleACS measurement science au2022

High-Throughput Mass Spectrometry Imaging with Dynamic Sparse Sampling.

Hang Hu, David Helminiak, Manxi Yang, Daisy Unsihuay, Ryan T Hilger, Dong Hye Ye, Julia Laskin

Abstract read
In one paragraph

Article in ACS measurement science au, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  16. Emerging Computational Methods in Mass Spectrometry Imaging.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hang HuDepartment of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID https://orcid.org/0000-0002-8590-9787
David HelminiakElectrical and Computer Engineering, Marquette University, Milwaukee, Wisconsin 53233, United States.
Manxi YangDepartment of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Daisy UnsihuayDepartment of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID https://orcid.org/0000-0003-1638-3301
Ryan T HilgerDepartment of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.
Dong Hye YeElectrical and Computer Engineering, Marquette University, Milwaukee, Wisconsin 53233, United States.ORCID https://orcid.org/0000-0002-9186-4095
Julia LaskinDepartment of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID https://orcid.org/0000-0002-4533-9644

Funding

Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass SpectrometryUH3CA255132 · NCI · PURDUE UNIVERSITY · PI LASKIN, JULIA · 2020 to 2021
$1.3M
Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass SpectrometryUG3HL145593 · NHLBI · PURDUE UNIVERSITY · PI LASKIN, JULIA · 2018 to 2019
$750k
NCI NIH HHS UH3 CA255132NHLBI NIH HHS UG3 HL145593
6 · The paper itself

Abstract

Mass spectrometry imaging (MSI) enables label-free mapping of hundreds of molecules in biological samples with high sensitivity and unprecedented specificity. Conventional MSI experiments are relatively slow, limiting their utility for applications requiring rapid data acquisition, such as intraoperative tissue analysis or 3D imaging. Recent advances in MSI technology focus on improving the spatial resolution and molecular coverage, further increasing the acquisition time. Herein, a deep learning approach for dynamic sampling (DLADS) was employed to reduce the number of required measurements, thereby improving the throughput of MSI experiments in comparison with conventional methods. DLADS trains a deep learning model to dynamically predict molecularly informative tissue locations for active mass spectra sampling and reconstructs high-fidelity molecular images using only the sparsely sampled information. Experimental hardware and software integration of DLADS with nanospray desorption electrospray ionization (nano-DESI) MSI is reported for the first time, which demonstrates a 2.3-fold improvement in throughput for a linewise acquisition mode. Meanwhile, simulations indicate that a 5-10-fold throughput improvement may be achieved using the pointwise acquisition mode.

Identifiers

PMID36281292
PMCPMC9585637

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.