Evidence map›Paper›PMID 36280735›Full record

ReviewNature genetics2022

Addressing the benefits of inhibiting APOBEC3-dependent mutagenesis in cancer.

Mia Petljak, Abby M Green, John Maciejowski, Matthew D Weitzman

Open access · greenAbstract readReview
In one paragraph

Review in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  7. HAMMER: Hairpin-based APOBEC3A-mediated mRNA editing reporter.bioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Mia Petljak *Broad Institute of MIT and Harvard, Cambridge, MA, USA. mpetljak@broadinstitute.org.ORCID http://orcid.org/0000-0001-8361-5390
Abby M Green *Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
John Maciejowski *Molecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-8134-9308
Matthew D Weitzman *Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Broad Institute · USChildren's Hospital of Philadelphia · USMemorial Sloan Kettering Cancer Center · USWashington University in St. Louis · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Immune control and genomic instability at micronucleiR37CA261183 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JOHN MACIEJOWSKI · 2022 to 2026
$2.4M
Molecular origins and impact of APOBEC3 mutagenesis in cancerR01CA270102 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI MACIEJOWSKI, JOHN · 2022 to 2025
$1.9M
The origins of chromosome rearrangement in the cancer genomeR00CA212290 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI MACIEJOWSKI, JOHN · 2018 to 2020
$654k
Exploring the oncogenic potential of human APOBEC3 cytosine deaminasesR21CA185799 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI WEITZMAN, MATTHEW D. · 2015 to 2016
$402k
The origins of chromosome rearrangement in the cancer genomeK99CA212290 · NCI · ROCKEFELLER UNIVERSITY · PI MACIEJOWSKI, JOHN · 2016 to 2017
$240k
NCI NIH HHS K99 CA212290NCI NIH HHS P30 CA008748NCI NIH HHS R00 CA212290NCI NIH HHS R01 CA270102NCI NIH HHS R21 CA185799NCI NIH HHS R37 CA261183
6 · The paper itself

Abstract

Mutational signatures associated with apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like (APOBEC)3 cytosine deaminase activity have been found in over half of cancer types, including some therapy-resistant and metastatic tumors. Driver mutations can occur in APOBEC3-favored sequence contexts, suggesting that mutagenesis by APOBEC3 enzymes may drive cancer evolution. The APOBEC3-mediated signatures are often detected in subclonal branches of tumor phylogenies and are acquired in cancer cell lines over long periods of time, indicating that APOBEC3 mutagenesis can be ongoing in cancer. Collectively, these and other observations have led to the proposal that APOBEC3 mutagenesis represents a disease-modifying process that could be inhibited to limit tumor heterogeneity, metastasis and drug resistance. However, critical aspects of APOBEC3 biology in cancer and in healthy tissues have not been clearly defined, limiting well-grounded predictions regarding the benefits of inhibiting APOBEC3 mutagenesis in different settings in cancer. We discuss the relevant mechanistic gaps and strategies to address them to investigate whether inhibiting APOBEC3 mutagenesis may confer clinical benefits in cancer.

Indexed as

NeoplasmsAPOBEC-1 DeaminaseAPOBEC DeaminasesCytidine DeaminaseHumansMutagenesisMutationAPOBEC-1 DeaminaseAPOBEC3 proteins, humanAPOBEC DeaminasesCytidine Deaminase

Identifiers

PMID36280735
PMCPMC9700387
OpenAlexW4307230120

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.