Evidence map›Paper›PMID 36280687›Full record

ArticleNature communications2022

Computational pharmacogenomic screen identifies drugs that potentiate the anti-breast cancer activity of statins.

Jenna E van Leeuwen, Wail Ba-Alawi, Emily Branchard, Jennifer Cruickshank, Wiebke Schormann, Joseph Longo, Jennifer Silvester, Peter L Gross, David W Andrews, David W Cescon and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Jenna E van LeeuwenDepartment of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0002-4744-2960
Wail Ba-AlawiDepartment of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0002-2747-4703
Emily Branchard *Princess Margaret Cancer Centre, University Health Network, 101 College Street, Toronto, ON, M5G 1L7, Canada.
Jennifer Cruickshank *Princess Margaret Cancer Centre, University Health Network, 101 College Street, Toronto, ON, M5G 1L7, Canada.
Wiebke Schormann *Biological Sciences, Sunnybrook Research Institute, University of Toronto, Toronto, ON, M4N 3M5, Canada.ORCID 0000-0003-3055-2706
Joseph LongoDepartment of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0002-9580-5105
Jennifer SilvesterPrincess Margaret Cancer Centre, University Health Network, 101 College Street, Toronto, ON, M5G 1L7, Canada.
Peter L GrossDepartment of Medicine, McMaster University, 1280 Main St W, Hamilton, ON, L8S 4L8, Canada.ORCID 0000-0002-8698-7074
David W AndrewsDepartment of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0002-9266-7157
David W CesconPrincess Margaret Cancer Centre, University Health Network, 101 College Street, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0002-1080-0998
Benjamin Haibe-KainsDepartment of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, M5G 1L7, Canada. Benjamin.Haibe-Kains@uhnresearch.ca.
Linda Z PennDepartment of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, M5G 1L7, Canada. Linda.Penn@uhnresearch.ca.ORCID 0000-0001-8133-5459
Deena M A GendooCentre for Computational Biology, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, Birmingham, B15 2TT, UK. d.gendoo@bham.ac.uk.ORCID 0000-0001-8891-4138
University Health Network · CASunnybrook Health Science Centre · CAMcMaster University · CAOntario Institute for Cancer Research · CAUniversity of Birmingham · GB

Funding

CIHR FDN-143312
6 · The paper itself

Abstract

Statins, a family of FDA-approved cholesterol-lowering drugs that inhibit the rate-limiting enzyme of the mevalonate metabolic pathway, have demonstrated anticancer activity. Evidence shows that dipyridamole potentiates statin-induced cancer cell death by blocking a restorative feedback loop triggered by statin treatment. Leveraging this knowledge, we develop an integrative pharmacogenomics pipeline to identify compounds similar to dipyridamole at the level of drug structure, cell sensitivity and molecular perturbation. To overcome the complex polypharmacology of dipyridamole, we focus our pharmacogenomics pipeline on mevalonate pathway genes, which we name mevalonate drug-network fusion (MVA-DNF). We validate top-ranked compounds, nelfinavir and honokiol, and identify that low expression of the canonical epithelial cell marker, E-cadherin, is associated with statin-compound synergy. Analysis of remaining prioritized hits led to the validation of additional compounds, clotrimazole and vemurafenib. Thus, our computational pharmacogenomic approach identifies actionable compounds with pathway-specific activities.

Indexed as

Breast NeoplasmsHydroxymethylglutaryl-CoA Reductase InhibitorsCadherinsCholesterolClotrimazoleDipyridamoleFemaleHumansMevalonic AcidNelfinavirPharmacogeneticsVemurafenibCadherinsCholesterolClotrimazoleDipyridamoleHydroxymethylglutaryl-CoA Reductase InhibitorsMevalonic AcidNelfinavirVemurafenib

Identifiers

PMID36280687
PMCPMC9592602
OpenAlexW4307391146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.