Evidence map›Paper›PMID 36279588›Full record

ArticleAnalytical chemistry2022

Raman Spectroscopy in Open-World Learning Settings Using the Objectosphere Approach.

Yaroslav Balytskyi, Justin Bendesky, Tristan Paul, Guy M Hagen, Kelly McNear

Abstract read
In one paragraph

Article in Analytical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yaroslav BalytskyiDepartment of Physics and Energy Science, University of Colorado, Colorado Springs, Colorado 80918, United States.ORCID 0000-0002-7582-6232
Justin BendeskyDepartment of Chemistry, New York University, New York, New York 10003, United States.
Tristan PaulDepartment of Physics and Energy Science, University of Colorado, Colorado Springs, Colorado 80918, United States.
Guy M HagenUCCS BioFrontiers Center, University of Colorado, Colorado Springs, Colorado 80918, United States.
Kelly McNearUCCS BioFrontiers Center, University of Colorado, Colorado Springs, Colorado 80918, United States.

Funding

Imaging Live Cells with Super-Resolution MicroscopyR15GM128166 · NIGMS · UNIVERSITY OF COLORADO · PI HAGEN, GUY, SPENDIER, KATHRIN · 2018 to 2023
$945k
NIGMS NIH HHS R15 GM128166
6 · The paper itself

Abstract

Raman spectroscopy, combined with machine learning techniques, holds great promise for many applications as a rapid, sensitive, and label-free identification method. Such approaches perform well when classifying spectra of chemical species that were encountered during the training phase. That is, species that are known to the neural network. However, in real-world settings, such as in clinical applications, there will always be substances whose spectra have not yet been taken. When the neural network encounters these new species during the testing phase, the number of false positives becomes uncontrollable, limiting the usefulness of these techniques, especially in public safety applications. To overcome these barriers, we implemented the recently introduced Entropic Open Set and Objectosphere loss functions. To demonstrate the efficacy and efficiency of this approach, we compiled a database of hyperspectral Raman images of 40 chemical species separating them into three class categorizations. The known class consisted of 20 biologically relevant species comprising amino acids, the ignored class was 10 "irrelevant" species comprising bio-related chemicals, and the never seen before class was 10 various chemical species that the neural network had not seen before. We show that this approach not only enables the network to effectively separate the unknown species while preserving high accuracy on the known ones and reducing false positives but also performs better than the current gold standards in machine learning techniques. This opens the door to using Raman spectroscopy, combined with our novel machine learning algorithm, in a variety of practical applications. Availability and implementation: freely available on the web at https://github.com/BalytskyiJaroslaw/RamanOpenSet.git.

Indexed as

Machine LearningSpectrum Analysis, RamanAlgorithmsDatabases, FactualNeural Networks, Computer

Identifiers

PMID36279588
PMCPMC9728505

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.