Evidence map›Paper›PMID 36278395›Full record

ArticleEMBO reports2022

The plant-specific DDR factor SOG1 increases chromatin mobility in response to DNA damage.

Anis Meschichi, Lihua Zhao, Svenja Reeck, Charles White, Olivier Da Ines, Adrien Sicard, Frédéric Pontvianne, Stefanie Rosa

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Anis MeschichiPlant Biology Department, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0001-8946-6023
Lihua ZhaoPlant Biology Department, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0002-1758-9873
Svenja ReeckJohn Innes Centre, Norwich Research Park, Norwich, UK.
Charles WhiteInstitut Génétique Reproduction et Développement (iGReD), Université Clermont Auvergne, UMR 6293, CNRS, U1103 INSERM, Clermont-Ferrand, France.ORCID 0000-0001-8152-5797
Olivier Da InesInstitut Génétique Reproduction et Développement (iGReD), Université Clermont Auvergne, UMR 6293, CNRS, U1103 INSERM, Clermont-Ferrand, France.ORCID 0000-0002-1868-3781
Adrien SicardPlant Biology Department, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Frédéric PontvianneCNRS, Laboratoire Génome et Développement des Plantes (LGDP), Université de Perpignan Via Domitia, Perpignan, France.ORCID 0000-0002-2913-4104
Stefanie RosaPlant Biology Department, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0002-8100-1253
Swedish University of Agricultural Sciences · SECentre National de la Recherche Scientifique · FRJohn Innes Centre · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homologous recombination (HR) is a conservative DNA repair pathway in which intact homologous sequences are used as a template for repair. How the homology search happens in the crowded space of the cell nucleus is, however, still poorly understood. Here, we measure chromosome and double-strand break (DSB) site mobility in Arabidopsis thaliana, using lacO/LacI lines and two GFP-tagged HR reporters. We observe an increase in chromatin mobility upon the induction of DNA damage, specifically at the S/G2 phases of the cell cycle. This increase in mobility is lost in the sog1-1 mutant, a central transcription factor of the DNA damage response in plants. Also, DSB sites show particularly high mobility levels and their enhanced mobility requires the HR factor RAD54. Our data suggest that repair mechanisms promote chromatin mobility upon DNA damage, implying a role of this process in the early steps of the DNA damage response.

Indexed as

ChromatinDNA DamageChromatinArabidopsischromatin mobilityDNA damageDSBsSOG1

Identifiers

PMID36278395
PMCPMC9724665
OpenAlexW4306246712

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.