Evidence map›Paper›PMID 36277479›Full record

ArticlemicroPublication biology2022

Validation of Deep Learning-based Sleep State Classification.

Wei Chen, Xiaohui Zhang, Hanyang Miao, Michelle J Tang, Mark Anastasio, Joseph Culver, Jin-Moo Lee, Eric C Landsness

Abstract read
In one paragraph

Article in microPublication biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Wei ChenDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Xiaohui ZhangDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Hanyang MiaoDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Michelle J TangDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Mark AnastasioDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Joseph CulverDepartment of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jin-Moo LeeDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Eric C LandsnessDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.

Funding

Washington University University of Texas Southwestern VCID Consortium SiteUF1NS125512 · NINDS · WASHINGTON UNIVERSITY · PI Hongyu An, Andria Lee Ford · 2021 to 2026
$6.3M
Plasticizing the Cortex to Enhance Stroke RecoveryR37NS110699 · NINDS · WASHINGTON UNIVERSITY · PI LEE, JIN-MOO · 2019 to 2025
$3.5M
Mid-America Regional Coordinating Center (MARCC)U24NS107230 · NINDS · WASHINGTON UNIVERSITY · PI Andria Lee Ford, Peter David Panagos · 2018 to 2026
$2.8M
Local slow wave sleep in repair and recovery after strokeK08NS109292 · NINDS · WASHINGTON UNIVERSITY · PI LANDSNESS, ERIC C · 2020 to 2024
$943k
NINDS NIH HHS K08 NS109292NINDS NIH HHS R37 NS110699NINDS NIH HHS U24 NS107230NINDS NIH HHS UF1 NS125512
6 · The paper itself

Abstract

Deep learning methods have been developed to classify sleep states of mouse electroencephalogram (EEG) and electromyogram (EMG) recordings with accuracy reported as high as 97%. However, when applied to independent datasets, with a variety of experimental and recording conditions, sleep state classification accuracy often drops due to distributional shift. Mixture z-scoring, a pre-processing standardization of EEG/EMG signals, has been suggested to account for these variations. This study sought to validate mixture z-scoring in combination with a deep learning method on an independent dataset. The open-source software Accusleep, which implements mixture z-scoring in combination with deep learning via a convolutional neural network, was used to classify sleep states in 12, three-hour EEG/EMG recordings from mice sleeping in a head-fixed position. Mixture z-scoring with deep learning classified sleep states on two independent recordings with 85-92% accuracy and a Cohen's κ of 0.66-0.71. These results validate mixture z-scoring in combination with deep learning to classify sleep states with the potential for widespread use.

Identifiers

PMID36277479
PMCPMC9579869

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.