Evidence map›Paper›PMID 36277410›Full record

ArticleVirusdisease2022

Random distribution of nucleotide polymorphism throughout the genome of tomato-infecting begomovirus species occurring in India: implication in PCR based diagnosis.

Pradeep Kumar, Praveen Kumar Oraon, Pragati Yadav, Anirban Roy, Shailendra Goel, M Krishna Reddy, Sunil Kumar Mukherjee, Bikash Mandal

Open access · greenAbstract read
In one paragraph

Article in Virusdisease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Pradeep KumarAdvanced Centre for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India.
Praveen Kumar OraonDepartment of Botany, University of Delhi, Delhi, India.
Pragati YadavDepartment of Botany, University of Delhi, Delhi, India.
Anirban RoyAdvanced Centre for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India.
Shailendra GoelDepartment of Botany, University of Delhi, Delhi, India.
M Krishna ReddyDivision of Crop Protection, Indian Institute of Horticultural Research, Hessaraghatta Lake PO, Bangalore, India.
Sunil Kumar MukherjeeAdvanced Centre for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India.
Bikash MandalAdvanced Centre for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India.
Indian Agricultural Research Institute · INUniversity of Delhi · INIndian Institute of Horticultural Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiple begomovirus species are known to cause leaf curl disease in tomato in India. In order to develop specific and generic PCR based diagnostics for the tomato-infecting begomoviruses, in this study, we attempted to design primers initially based on the multiple alignment of the complete genome sequence of DNA-A component. However, the specific nucleotide stretches adequate for preparing specific primers could not be obtained. Alternatively, the online Primer-BLAST tool that offers designing of target-specific PCR primers was attempted to prepare specific primers targeting three clones (DNA-A) of tomato-infecting begomovirus species ( Supplementary Information: The online version contains supplementary material available at 10.1007/s13337-022-00785-9.

Indexed as

BegomovirusCross-reactivityDiagnosisIndiaPCRPrimer-BLAST toolPrimer designingSNVTomato

Identifiers

PMID36277410
PMCPMC9481814
OpenAlexW4295129511

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.