Evidence map›Paper›PMID 36275462›Full record

ArticlePeerJ2022

Ectopic expression of HIV-1 Tat modifies gene expression in cultured B cells: implications for the development of B-cell lymphomas in HIV-1-infected patients.

Anna A Valyaeva, Maria A Tikhomirova, Daria M Potashnikova, Alexandra N Bogomazova, Galina P Snigiryova, Aleksey A Penin, Maria D Logacheva, Eugene A Arifulin, Anna A Shmakova, Diego Germini and 7 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Anna A ValyaevaSchool of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Maria A TikhomirovaSchool of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Daria M PotashnikovaDepartment of Cell Biology and Histology, School of Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID 0000-0002-0098-827X
Alexandra N BogomazovaFederal Research and Clinical Center of Physical-Chemical Medicine, Moscow, Russia.
Galina P SnigiryovaBurdenko National Medical Research Center of Neurosurgery, Moscow, Russia.
Aleksey A PeninInstitute for Information Transmission Problems, Moscow, Russia.
Maria D LogachevaBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Eugene A ArifulinBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Anna A ShmakovaKoltzov Institute of Developmental Biology, Moscow, Russia.
Diego GerminiUMR9018 (CNRS - Institut Gustave Roussy - Université Paris Saclay), Centre National de Recherche Scientifique, Villejuif, France, France.
Anastasia I KachalovaDepartment of Cell Biology and Histology, School of Biology, Lomonosov Moscow State University, Moscow, Russia.
Aleena A SaidovaDepartment of Cell Biology and Histology, School of Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID 0000-0003-3294-7146
Anastasia A ZharikovaSchool of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Yana R MusinovaBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Andrey A MironovSchool of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Yegor S VassetzkyKoltzov Institute of Developmental Biology, Moscow, Russia.ORCID 0000-0003-3101-7043
Eugene V ShevalSchool of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.ORCID 0000-0003-1687-1321
Lomonosov Moscow State University · RUCentre National de la Recherche Scientifique · FRBurdenko Neurosurgery Institute · RUEngelhardt Institute of Molecular Biology · RUFederal Research and Clinical Center of Physical-Chemical Medicine named after Y.M. Lopukhin · RUInstitute for Information Transmission Problems · RUSkolkovo Institute of Science and Technology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An increased frequency of B-cell lymphomas is observed in human immunodeficiency virus-1 (HIV-1)-infected patients, although HIV-1 does not infect B cells. Development of B-cell lymphomas may be potentially due to the action of the HIV-1 Tat protein, which is actively released from HIV-1-infected cells, on uninfected B cells. The exact mechanism of Tat-induced B-cell lymphomagenesis has not yet been precisely identified. Here, we ectopically expressed either Tat or its TatC22G mutant devoid of transactivation activity in the RPMI 8866 lymphoblastoid B cell line and performed a genome-wide analysis of host gene expression. Stable expression of both Tat and TatC22G led to substantial modifications of the host transcriptome, including pronounced changes in antiviral response and cell cycle pathways. We did not find any strong action of Tat on cell proliferation, but during prolonged culturing, Tat-expressing cells were displaced by non-expressing cells, indicating that Tat expression slightly inhibited cell growth. We also found an increased frequency of chromosome aberrations in cells expressing Tat. Thus, Tat can modify gene expression in cultured B cells, leading to subtle modifications in cellular growth and chromosome instability, which could promote lymphomagenesis over time.

Indexed as

HIV-1Lymphoma, B-CellEctopic Gene ExpressionGene ExpressionHumanstat Gene Products, Human Immunodeficiency Virustat Gene Products, Human Immunodeficiency VirusB cellsGene expressionHIV-1 TatRNA-seqVirus-cell interactions

Identifiers

PMID36275462
PMCPMC9586123
OpenAlexW4301182396

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.