Evidence map›Paper›PMID 36274733›Full record

ArticleFrontiers in microbiology2022

The spatial distribution and biogeochemical drivers of nitrogen cycle genes in an Antarctic desert.

Francisco Pascoal, Inês Areosa, Luís Torgo, Paula Branco, Mafalda S Baptista, Charles K Lee, S Craig Cary, Catarina Magalhães

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Francisco PascoalInterdisciplinary Center of Marine and Environmental Research, University of Porto, Porto, Portugal.
Inês AreosaFaculty of Computer Science, Dalhousie University, Halifax, NS, Canada.
Luís TorgoFaculty of Computer Science, Dalhousie University, Halifax, NS, Canada.
Paula BrancoSchool of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, ON, Canada.
Mafalda S BaptistaInterdisciplinary Center of Marine and Environmental Research, University of Porto, Porto, Portugal.
Charles K LeeInternational Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand.
S Craig CaryInternational Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand.
Catarina MagalhãesInterdisciplinary Center of Marine and Environmental Research, University of Porto, Porto, Portugal.
Universidade do Porto · PTAntarctica New Zealand · NZDalhousie University · CAUniversity of Ottawa · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antarctic deserts, such as the McMurdo Dry Valleys (MDV), represent extremely cold and dry environments. Consequently, MDV are suitable for studying the environment limits on the cycling of key elements that are necessary for life, like nitrogen. The spatial distribution and biogeochemical drivers of nitrogen-cycling pathways remain elusive in the Antarctic deserts because most studies focus on specific nitrogen-cycling genes and/or organisms. In this study, we analyzed metagenome and relevant environmental data of 32 MDV soils to generate a complete picture of the nitrogen-cycling potential in MDV microbial communities and advance our knowledge of the complexity and distribution of nitrogen biogeochemistry in these harsh environments. We found evidence of nitrogen-cycling genes potentially capable of fully oxidizing and reducing molecular nitrogen, despite the inhospitable conditions of MDV. Strong positive correlations were identified between genes involved in nitrogen cycling. Clear relationships between nitrogen-cycling pathways and environmental parameters also indicate abiotic and biotic variables, like pH, water availability, and biological complexity that collectively impose limits on the distribution of nitrogen-cycling genes. Accordingly, the spatial distribution of nitrogen-cycling genes was more concentrated near the lakes and glaciers. Association rules revealed non-linear correlations between complex combinations of environmental variables and nitrogen-cycling genes. Association rules for the presence of denitrification genes presented a distinct combination of environmental variables from the remaining nitrogen-cycling genes. This study contributes to an integrative picture of the nitrogen-cycling potential in MDV.

Indexed as

Antarctic desertAntarctic metagenomicsassociation rulesMcMurdo Dry Valleysnitrogen cyclenitrogen-cycling genes

Identifiers

PMID36274733
PMCPMC9583160
OpenAlexW4302304996

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.