ArticleMicrobes and environments2022
Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan.
Article in Microbes and environments, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Apple pomace and hempseed cake can reduce methane intensity (CH₄/DMI) and alter the rumen microbiome in dairy cows: a shotgun metagenomic approach.Journal of animal science and biotechnology · 2026Article
- RuSpacer: a CRISPR spacer database derived from ruminant-associated prokaryotes for virome analysis.Scientific reports · 2026Article
- A molecular inventory of the faecal microbiomes of 23 marsupial species.Microbial genomics · 2026Article
- Multiomics insights into rumen microbiome and function in grazing lambs: implications for nutrient absorption and grassland sustainability.Microbiome · 2025Article
- Differences in prokaryotic and viral community between rumen and feces.Scientific reports · 2025Article
- UPGG: expanding the taxonomic and functional diversity of the pig gut microbiome with an enhanced genome catalog.NPJ biofilms and microbiomes · 2025Article
- Strain-resolved comparison of beef and draft cattle rumen microbiomes using single-microbe genomics.Animal microbiome · 2025Article
- Bioprospecting of 101 facultative rumen bacterial isolates through comprehensive genome analysis.Molecular biology reports · 2025Article
- Rumen DNA virome in beef cattle reveals an unexplored diverse community with potential links to carcass traits.ISME communications · 2025Article
- Impact of rumen microbiome on cattle carcass traits.Scientific reports · 2024Article
- A rumen virosphere with implications of contribution to fermentation and methane production, and endemism in cattle breeds and individuals.Applied and environmental microbiology · 2024Article
- Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions.Foods (Basel, Switzerland) · 2023Review
- Domain-level Identification of Single Prokaryotic Cells by Optical Photothermal Infrared Spectroscopy.Microbes and environments · 2023Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and <10% contamination, from cattle in Japan. The majority of MAGs were potentially novel strains, encoding various enzymes related to plant biomass degradation and volatile fatty acid production. The MAGs identified in the present study may be valuable resources to enhance the resolution of future taxonomical and functional studies based on metagenomes and metatranscriptomes.
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