Evidence map›Paper›PMID 36273016›Full record

ArticleScientific reports2022

In silico evaluation of WHO-endorsed molecular methods to detect drug resistant tuberculosis.

Alice Brankin, Marva Seifert, Sophia B Georghiou, Timothy M Walker, Swapna Uplekar, Anita Suresh, Rebecca E Colman

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. A simplified pyrazinamidase test forJournal of clinical microbiology · 2024
    Article
  7. Article
  8. International journal of microbiology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Alice BrankinNuffield Department of Medicine, University of Oxford, Oxford, UK.
Marva SeifertFIND, the Global Alliance for Diagnostics, Geneva, Switzerland.
Sophia B GeorghiouFIND, the Global Alliance for Diagnostics, Geneva, Switzerland.
Timothy M WalkerNuffield Department of Medicine, University of Oxford, Oxford, UK.
Swapna UplekarFIND, the Global Alliance for Diagnostics, Geneva, Switzerland.
Anita SureshFIND, the Global Alliance for Diagnostics, Geneva, Switzerland.
Rebecca E ColmanFIND, the Global Alliance for Diagnostics, Geneva, Switzerland. rebecca.colman@finddx.org.
Foundation for Innovative New Diagnostics · CHUniversity of California, San Diego · USOxford University Clinical Research Unit · VN

Funding

Wellcome TrustWellcome Trust 214560/Z/18/Z
6 · The paper itself

Abstract

Universal drug susceptibility testing (DST) for tuberculosis is a major goal of the END TB strategy. PCR-based molecular diagnostic tests have been instrumental in increasing DST globally and several assays have now been endorsed by the World Health Organization (WHO) for use in the diagnosis of drug resistance. These endorsed assays, however, each interrogate a limited number of mutations associated with resistance, potentially limiting their sensitivity compared to sequencing-based methods. We applied an in silico method to compare the sensitivity and specificity of WHO-endorsed molecular based diagnostics to the mutation set identified by the WHO mutations catalogue using phenotypic DST as the reference. We found that, in silico, the mutation sets used by probe-based molecular diagnostic tests to identify rifampicin, isoniazid, pyrazinamide, levofloxacin, moxifloxacin, amikacin, capreomycin and kanamycin resistance produced similar sensitivities and specificities to the WHO mutation catalogue. PCR-based diagnostic tests were most sensitive for drugs where mechanisms of resistance are well established and localised to small genetic regions or a few prevalent mutations. Approaches using sequencing technologies can provide advantages for drugs where our knowledge of resistance is limited, or where complex resistance signatures exist.

Indexed as

Mycobacterium tuberculosisTuberculosis, Multidrug-ResistantAmikacinAntitubercular AgentsCapreomycinGenotypeHumansIsoniazidLevofloxacinMicrobial Sensitivity TestsMoxifloxacinPyrazinamideRifampinWorld Health OrganizationAmikacinAntitubercular AgentsCapreomycinIsoniazidLevofloxacinMoxifloxacinPyrazinamideRifampin

Identifiers

PMID36273016
PMCPMC9587982
OpenAlexW4307138330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.