ArticleNucleic acids research2023
CuGenDBv2: an updated database for cucurbit genomics.
Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.
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Who cites it
74 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta genetic analysis of melon sweetness.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Pooled it
- Article
- Fine mapping and characterization of the bitter gourd mature fruit-length QTL mfl5.1 reveals a lectin receptor-like kinase gene McLECRK1b controlling fruit elongation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Synergistic regulation of abiotic stress adaptation by copper miRNAs miR398 and miR408 in melon.The Plant journal : for cell and molecular biology · 2026Article
- Chitosan-loaded copper oxide nanocomposite as a promising antiviral alleviates Zucchini yellow mosaic virus infection in squash plants.BMC plant biology · 2026Article
- BAT: an integrated pipeline for gene tree construction, annotation, and functional inference.bioRxiv : the preprint server for biology · 2026Article
- A PLETHORA3/7 transcription factor shapes cucumber shoot architecture.The New phytologist · 2026Article
- Multiomics analysis ofHorticulture research · 2026Article
- CGRP: A versatile platform for exploring Cucurbitales genomics.Plant communications · 2026Article
- Pleiotropic mutation in a tendril TCP gene underlies the yield-enhancing multiple-flowering trait in summer squash (Cucurbita pepo).The Plant journal : for cell and molecular biology · 2026Article
- Identification of race 2 anthracnose resistance Quantitative Trait Loci using biparental and association panel of diverse watermelon germplasm accessions.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genome-wide identification of the GATA transcription factor family in ten Cucurbitaceae species and expression analysis of ClGATA genes in watermelon stress responses.BMC genomics · 2026Article
- A methodological framework for developing bioinformatics databases: a case study on theFrontiers in genetics · 2026Article
- Integration of ATAC-seq and RNA-seq unveils transcription factors involved in low-nitrogen tolerance in cucumber.Frontiers in plant science · 2026Article
- Whole-genome simple sequence repeat development and genetic diversity analysis of sponge gourd (PeerJ · 2026Article
- Genome-wide characterization of NBS-encoding genes inFrontiers in genetics · 2026Article
- Article
- Allelic differences within DNA polymerase delta subunit 1 correlate with geminivirus resistance in diverse plants.G3 (Bethesda, Md.) · 2025Article
- ClaPEPCK4: target gene for breeding innovative watermelon germplasm with low malic acid and high sweetness.GM crops & food · 2025Article
- Multi-omics integration of transcriptome, miRNA, and metabolome uncovers molecular mechanisms of male flower development in cucumber line B10 (Cucumis sativus L.).Scientific reports · 2025Article
14 more citing papers are in PubMed but not listed here.
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Authors and funding
20 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Cucurbitaceae (cucurbit) family consists of about 1,000 species in 95 genera, including many economically important and popular fruit and vegetable crops. During the past several years, reference genomes have been generated for >20 cucurbit species, and variome and transcriptome profiling data have been rapidly accumulated for cucurbits. To efficiently mine, analyze and disseminate these large-scale datasets, we have developed an updated version of Cucurbit Genomics Database. The updated database, CuGenDBv2 (http://cucurbitgenomics.org/v2), currently hosts 34 reference genomes from 27 cucurbit species/subspecies belonging to 10 different genera. Protein-coding genes from these genomes have been comprehensively annotated by comparing their protein sequences to various public protein and domain databases. A novel 'Genotype' module has been implemented to facilitate mining and analysis of the functionally annotated variome data including SNPs and small indels from large-scale genome sequencing projects. An updated 'Expression' module has been developed to provide a comprehensive gene expression atlas for cucurbits. Furthermore, synteny blocks between any two and within each of the 34 genomes, representing a total of 595 pair-wise genome comparisons, have been identified and can be explored and visualized in the database.
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