Evidence map›Paper›PMID 36271387›Full record

ArticleHereditas2022

Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation.

Jun Liu, Tianyu Jin, Lanxi Ran, Ze Zhao, Rui Zhu, Gangcai Xie, Xiaolin Bi

Open access · goldAbstract read
In one paragraph

Article in Hereditas, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jun LiuSchool of Medicine, Nantong University, Nantong, 226001, China.
Tianyu JinCollege of Basic Medical Medicine, Dalian Medical University, Dalian, 116044, China.
Lanxi RanCollege of Basic Medical Medicine, Dalian Medical University, Dalian, 116044, China.
Ze ZhaoCollege of Basic Medical Medicine, Dalian Medical University, Dalian, 116044, China.
Rui ZhuCollege of Basic Medical Medicine, Dalian Medical University, Dalian, 116044, China.
Gangcai XieSchool of Medicine, Nantong University, Nantong, 226001, China. gangcai@ntu.edu.cn.ORCID http://orcid.org/0000-0002-8286-2987
Xiaolin BiSchool of Medicine, Nantong University, Nantong, 226001, China. bixl@ntu.edu.cn.ORCID http://orcid.org/0000-0002-7172-7851
Dalian Medical University · CNNantong University · CN

Funding

National Natural Science Foundation of China 31771437National Natural Science Foundation of China 31900484National Natural Science Foundation of China 31970605
6 · The paper itself

Abstract

backgroundATM (ataxia-telangiectasia mutated) protein kinase is highly conserved in metazoan, and plays a critical role at DNA damage response, oxidative stress, metabolic stress, immunity, RNA biogenesis etc. Systemic profiling of ATM regulated genes, including protein-coding genes, miRNAs, and long non-coding RNAs, will greatly improve our understanding of ATM functions and its regulation. 

results1) differentially expressed protein-coding genes, miRNAs, and long non-coding RNAs in atm mutated flies were identified at physiological condition and after X-ray irradiation. 2) functions of differentially expressed genes in atm mutated flies, regardless of protein-coding genes or non-coding RNAs, are closely related with metabolic process, immune response, DNA damage response or oxidative stress. 3) these phenomena are persistent after irradiation. 4) there is a cross-talk regulation towards miRNAs by ATM, E2f1, and p53 during development and after irradiation. 5) knock-out flies or knock-down flies of most irradiation-induced miRNAs were sensitive to ionizing radiation.

conclusionsWe provide a valuable resource of protein-coding genes, miRNAs, and long non-coding RNAs, for understanding ATM functions and regulations. Our work provides the new evidence of inter-dependence among ATM-E2F1-p53 for the regulation of miRNAs.

Indexed as

MicroRNAsRNA, Long NoncodingAnimalsDrosophilaRadiation, IonizingTumor Suppressor Protein p53MicroRNAsRNA, Long NoncodingTumor Suppressor Protein p53ATMlncRNAmiRNAX-ray irradiation

Identifiers

PMID36271387
PMCPMC9587650
OpenAlexW4307090904

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.