Evidence map›Paper›PMID 36271336›Full record

ArticleBMC microbiology2022

Whole genome sequencing of Moraxella bovis strains from North America reveals two genotypes with different genetic determinants.

Emily L Wynn, Matthew M Hille, John Dustin Loy, Gennie Schuller, Kristen L Kuhn, Aaron M Dickey, James L Bono, Michael L Clawson

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  6. Targeted next-generation sequencing assay to detect 3Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
    Article
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  11. Genotype classification ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Emily L WynnUnited States Department of Agriculture (USDA), Agricultural Research Service (ARS), United States Meat Animal Research Center, 844 Rd 313, Clay Center, NE, 68901, USA.
Matthew M HilleSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA.
John Dustin LoySchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA.
Gennie SchullerUnited States Department of Agriculture (USDA), Agricultural Research Service (ARS), United States Meat Animal Research Center, 844 Rd 313, Clay Center, NE, 68901, USA.
Kristen L KuhnUnited States Department of Agriculture (USDA), Agricultural Research Service (ARS), United States Meat Animal Research Center, 844 Rd 313, Clay Center, NE, 68901, USA.
Aaron M DickeyUnited States Department of Agriculture (USDA), Agricultural Research Service (ARS), United States Meat Animal Research Center, 844 Rd 313, Clay Center, NE, 68901, USA.
James L BonoUnited States Department of Agriculture (USDA), Agricultural Research Service (ARS), United States Meat Animal Research Center, 844 Rd 313, Clay Center, NE, 68901, USA.
Michael L ClawsonUnited States Department of Agriculture (USDA), Agricultural Research Service (ARS), United States Meat Animal Research Center, 844 Rd 313, Clay Center, NE, 68901, USA. mike.clawson@usda.gov.
United States Department of Agriculture · USAgricultural Research Service · USUniversity of Nebraska–Lincoln · USRoman L. Hruska U.S. Meat Animal Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMoraxella bovis and Moraxella bovoculi both associate with infectious bovine keratoconjunctivitis (IBK), an economically significant and painful ocular disease that affects cattle worldwide. There are two genotypes of M. bovoculi (genotypes 1 and 2) that differ in their gene content and potential virulence factors, although neither have been experimentally shown to cause IBK. M. bovis is a causative IBK agent, however, not all strains carry a complete assortment of known virulence factors. The goals of this study were to determine the population structure and depth of M. bovis genomic diversity, and to compare core and accessory genes and predicted outer membrane protein profiles both within and between M. bovis and M. bovoculi.

resultsPhylogenetic trees and bioinformatic analyses of 36 M. bovis chromosomes sequenced in this study and additional available chromosomes of M. bovis and both genotype 1 and 2 M. bovoculi, showed there are two genotypes (1 and 2) of M. bovis. The two M. bovis genotypes share a core of 2015 genes, with 121 and 186 genes specific to genotype 1 and 2, respectively. The two genotypes differ by their chromosome size and prophage content, encoded protein variants of the virulence factor hemolysin, and by their affiliation with different plasmids. Eight plasmid types were identified in this study, with types 1 and 6 observed in 88 and 56% of genotype 2 strains, respectively, and absent from genotype 1 strains. Only type 1 plasmids contained one or two gene copies encoding filamentous haemagglutinin-like proteins potentially involved with adhesion. A core of 1403 genes was shared between the genotype 1 and 2 strains of both M. bovis and M. bovoculi, which encoded a total of nine predicted outer membrane proteins.

conclusionsThere are two genotypes of M. bovis that differ in both chromosome content and plasmid profiles and thus may not equally associate with IBK. Immunological reagents specifically targeting select genotypes of M. bovis, or all genotypes of M. bovis and M. bovoculi together could be designed from the outer membrane proteins identified in this study.

Indexed as

Cattle DiseasesKeratoconjunctivitis, InfectiousMoraxella bovisMoraxellaceae InfectionsAnimalsCattleGenotypeHemagglutininsHemolysin ProteinsPhylogenyVirulence FactorsWhole Genome SequencingHemagglutininsHemolysin ProteinsVirulence FactorsCore genomeGenotypeInfectious bovine keratoconjunctivitisMoraxella bovisMoraxella bovoculiOuter membrane protein

Identifiers

PMID36271336
PMCPMC9585708
OpenAlexW4306969356

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.