Evidence map›Paper›PMID 36270447›Full record

ArticleJournal of global antimicrobial resistance2022

Genotyping and macrolide-resistant mutation of Bordetella pertussis in East and South-East Asia.

Kentaro Koide, ShuMan Yao, Chuen-Sheue Chiang, Phung Thi Bich Thuy, Do Thi Thuy Nga, Do Thu Huong, Tran Minh Dien, Ork Vichit, Yong Vutthikol, Siphan Sovannara and 7 more

Open access · goldAbstract read
In one paragraph

Article in Journal of global antimicrobial resistance, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Absence of Macrolide-Resistant Mutations inOpen forum infectious diseases · 2025
    Article
  7. Macrolide-ResistantMicroorganisms · 2025
    Article
  8. Review
  9. Article
  10. DecipheringJournal of clinical microbiology · 2024
    Article
  11. Article
  12. [Pertussis worldwide. Vaccinating children and adults].Medecine tropicale et sante internationale · 2023
    Article
  13. Clinical microbiology reviews · 2023
    Review
  14. Article
  15. Severe problem of macrolides resistance to common pathogens in China.Frontiers in cellular and infection microbiology · 2023
    Review
  16. Macrolide Resistance inAntibiotics (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Kentaro KoideDepartment of Bacteriology II, National Institute of Infectious Diseases, Tokyo, Japan.
ShuMan YaoCentre for Diagnostics and Vaccine Development, Centres for Disease Control, Taipei, Taiwan.
Chuen-Sheue ChiangCentre for Diagnostics and Vaccine Development, Centres for Disease Control, Taipei, Taiwan.
Phung Thi Bich ThuyDepartment of Molecular Biology for Infectious Disease, Vietnam National Children's Hospital, Hanoi, Vietnam.
Do Thi Thuy NgaDivision of General Internal Medicine, Centre for Tropical Diseases, Vietnam National Children's Hospital, Hanoi, Vietnam.
Do Thu HuongDivision of General Internal Medicine, Centre for Tropical Diseases, Vietnam National Children's Hospital, Hanoi, Vietnam.
Tran Minh DienSurgical Intensive Care Unit, Vietnam National Children's Hospital, Hanoi, Vietnam.
Ork VichitNational Immunization Program, Ministry of Health, Cambodia.
Yong VutthikolNational Immunization Program, Ministry of Health, Cambodia.
Siphan SovannaraNational Immunization Program, Ministry of Health, Cambodia.
Chham SamnangVaccine-Preventable Diseases and Immunization, World Health Organization, Cambodia.
Ikuyo TakayamaResearch Centre for Influenza and Respiratory Viruses, National Institute of Infectious Diseases, Tokyo, Japan.
Akira AinaiDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, Japan.
Noriko NakajimaDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, Japan.
Nao OtsukaDepartment of Bacteriology II, National Institute of Infectious Diseases, Tokyo, Japan.
Kazunari KamachiDepartment of Bacteriology II, National Institute of Infectious Diseases, Tokyo, Japan. Electronic address: kamachi@nih.go.jp.
Akihiko SaitohDepartment of Pediatrics, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
National Institute of Infectious Diseases · JPMinistry of Health · KHDevelopment Center for Biotechnology · TWHospital for Tropical Diseases · VNVietnam National Children's Hospital · VNNiigata University · JP

Funding

World Health Organization 001
6 · The paper itself

Abstract

objectivesMacrolide-resistant Bordetella pertussis (MRBP) has been emerging and prevailing in mainland China since 2011. In this study, we aimed to investigate the genotype and macrolide resistance of circulating B. pertussis in East and Southeast Asia using genetic analyses.

methodsA total of 302 DNA extracts from clinical specimens and isolates from 2010 to 2020 were analyzed: 145 from Vietnam, 76 from Cambodia, 48 from Taiwan, and 33 from Japan. Genotypes were determined by multilocus variable-number tandem-repeat analysis (MLVA). Macrolide-resistant A2047G mutation in B. pertussis 23S rRNA was investigated using the duplex Cycleave real-time polymerase chain reaction (PCR) assay. Whole-genome sequencing was performed on two MRBP isolates that were identified for the first time in Taiwan.

resultsOverall, 286 DNA extracts (95%) generated a complete MLVA genotype and 283 DNA extracts (94%) yielded a complete result for the A2047G mutation analysis. The A2047G mutation was detected in 18 DNA extracts: fourteen from Vietnam, one from Cambodia, two from Taiwan, and one from Japan. Most of them (78%) showed the genotypes MT104 and MT195, which have previously been reported in Chinese MRBP isolates. Further, the Taiwanese MRBP isolates were classified into the MT104 clade of Chinese MRBP isolates.

conclusionAfter MRBP emerged and spread in mainland China, it may have spread to East and Southeast Asia in the 2010s. Continued surveillance targeting the A2047G mutation of MRBP is needed to prevent further spread of this emerging pathogen.

Indexed as

Bordetella pertussisWhooping CoughAnti-Bacterial AgentsAsia, EasternAsia, SoutheasternDrug Resistance, BacterialGenotypeHumansMacrolidesMutationAnti-Bacterial AgentsMacrolides23S rRNABordetella pertussisEast and Southeast AsiaMacrolide-resistant A2047G mutationMultilocus variable-number tandem-repeat analysisWhole-genome sequencing

Identifiers

PMID36270447
PMCPMC9750937
OpenAlexW4306681802

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.