Evidence map›Paper›PMID 36270064›Full record

ArticleJournal of psychiatric research2022

Genome-wide DNA methylation analysis of post-operative delirium with brain, blood, saliva, and buccal samples from neurosurgery patients.

Nadia E Wahba, Yoshitaka Nishizawa, Pedro S Marra, Takehiko Yamanashi, Kaitlyn J Crutchley, Takaaki Nagao, Kazuki Shibata, Tsuyoshi Nishiguchi, Hyunkeun Cho, Mathew A Howard and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of psychiatric research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Nadia E WahbaUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA; Oregon Health & Science University, School of Medicine, Department of Psychiatry, Portland, OR, USA.
Yoshitaka NishizawaStanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA; Osaka Medical and Pharmaceutical University, Faculty of Medicine, Department of Neuropsychiatry, Takatsuki, Osaka, Japan.
Pedro S MarraUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Takehiko YamanashiUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA; Stanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA; Tottori University Faculty of Medicine, Department of Neuropsychiatry, Yonago, Tottori, Japan.
Kaitlyn J CrutchleyUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA; University of Nebraska Medical Center, College of Medicine, Omaha, NE, USA.
Takaaki NagaoToho University School of Medicine Faculty of Medicine, Department of Neurosurgery (Sakura), Sakura-shi, Chiba, Japan.
Kazuki ShibataStanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA; Sumitomo Pharma Co. Ltd, Osaka, Osaka, Japan.
Tsuyoshi NishiguchiStanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA; Tottori University Faculty of Medicine, Department of Neuropsychiatry, Yonago, Tottori, Japan.
Hyunkeun ChoUniversity of Iowa College of Public Health, Department of Biostatistics, Iowa City, IA, USA.
Mathew A HowardUniversity of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA.
Hiroto KawasakiUniversity of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA.
Marco HeftiUniversity of Iowa Carver College of Medicine, Department of Pathology, Iowa City, IA, USA.
Tetsufumi KanazawaOsaka Medical and Pharmaceutical University, Faculty of Medicine, Department of Neuropsychiatry, Takatsuki, Osaka, Japan.
Gen ShinozakiUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA; Stanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA. Electronic address: gens@stanford.edu.
University of Iowa · USOsaka University of Pharmaceutical Sciences · JPSumitomo Dainippon Pharma (Japan) · JPToho University · JPTottori University · JP

Funding

Identification of Epigenetics Correlates between Brain and Peripheral TissuesR01MH119165 · NIMH · UNIVERSITY OF IOWA · PI SHINOZAKI, GEN · 2020 to 2024
$3.0M
Novel tau-based diagnostics for neonatal hypoxic-ischemic injuryK23NS109284 · NINDS · UNIVERSITY OF IOWA · PI HEFTI, MARCO MATTHIAS · 2019 to 2023
$950k
NIMH NIH HHS R01 MH119165NINDS NIH HHS K23 NS109284
6 · The paper itself

Abstract

objectiveNo previous study demonstrates the difference in the genome-wide DNA methylation status of post-operative delirium (POD) using human brain tissue obtained from neurosurgery and multiple peripheral tissues such as blood, saliva, and buccal samples from the same individuals. We aimed to identify epigenetic marks of DNA methylation in the brain and peripheral tissues to elucidate the potential pathophysiological mechanism of POD.

methodsThe four tissue types (brain, blood, saliva, buccal) of DNA samples from up to 40 patients, including 11 POD cases, were analyzed using Illumina EPIC array. DNAm differences between patients with and without POD were examined. We also conducted enrichment analysis based on the top DNAm signals.

resultsThe most different CpG site between control and POD was found at cg16526133 near the ADAMTS9 gene from the brain tissue(p = 8.66E-08). However, there are no CpG sites to reach the genome-wide significant level. The enrichment analysis based on the 1000 top hit CpG site (p < 0.05) on the four tissues showed several intriguing pathways. In the brain, there are pathways including "positive regulation of glial cell differentiation". Blood samples showed also pathways related to immune function. Besides, both saliva and the buccal sample showed pathways related to circadian rhythm, although these findings were not FDR significant.

conclusionEnrichment analysis found several intriguing pathways related to potential delirium pathophysiology. Present data may further support the role of epigenetics, especially DNA methylation, in the molecular mechanisms of delirium pathogenesis.

Indexed as

Emergence DeliriumBrainDNA MethylationEpigenomicsHumansDeliriumDNA methylationEpigeneticsGenome-wideNeurosurgeryPost-operative delirium

Identifiers

PMID36270064
PMCPMC10540238
OpenAlexW4303857454

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.