Evidence map›Paper›PMID 36269415›Full record

ArticleArchives of virology2022

Genome sequence of pineapple secovirus B, a second sadwavirus reported infecting Ananas comosus.

Adriana Larrea-Sarmiento, Andrew D W Geering, Alejandro Olmedo-Velarde, Xupeng Wang, Wayne Borth, Tracie K Matsumoto, Jon Y Suzuki, Marisa M Wall, Michael Melzer, Richard Moyle and 3 more

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Genetic Diversity of Viral Populations Associated withPathogens (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Adriana Larrea-SarmientoDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, USA.
Andrew D W GeeringQueensland Alliance for Agriculture and Food Innovation, Centre for Horticultural Science, The University of Queensland, Ecosciences Precinct, 4001, Brisbane, QLD, GPO Box 267, Australia.
Alejandro Olmedo-VelardeDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, USA.
Xupeng WangDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, USA.
Wayne BorthDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, USA.
Tracie K MatsumotoDepartment of Agriculture, Agricultural Research Service, United States, Daniel K. Inouye U. S. Pacific Basin Agricultural Research Center, Hilo, HI, USA.
Jon Y SuzukiDepartment of Agriculture, Agricultural Research Service, United States, Daniel K. Inouye U. S. Pacific Basin Agricultural Research Center, Hilo, HI, USA.
Marisa M WallDepartment of Agriculture, Agricultural Research Service, United States, Daniel K. Inouye U. S. Pacific Basin Agricultural Research Center, Hilo, HI, USA.
Michael MelzerDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, USA.
Richard MoyleSchool of Agriculture and Food Sciences, The University of Queensland, 4072, St Lucia, QLD, Australia.
Murray SharmanDepartment of Agriculture and Fisheries, Ecosciences Precinct, 4001, Brisbane, QLD, GPO Box 267, Australia.
John HuDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, USA. johnhu@hawaii.edu.ORCID http://orcid.org/0000-0003-3003-4140
John E ThomasQueensland Alliance for Agriculture and Food Innovation, Centre for Horticultural Science, The University of Queensland, Ecosciences Precinct, 4001, Brisbane, QLD, GPO Box 267, Australia. j.thomas2@uq.edu.au.
University of Hawaii System · USDaniel K. Inouye U.S. Pacific Basin Agricultural Research Center · USThe University of Queensland · AUDepartment of Primary Industries · AUUniversity of Hawaiʻi at Mānoa · US

Funding

Agricultural Research Service HAW09025-H (1001478)National Institute of Food and Agriculture 58-5320-4-012
6 · The paper itself

Abstract

The complete genome sequence of pineapple secovirus B (PSV-B), a new virus infecting pineapple (Ananas comosus) on the island of Oahu, Hawaii, was determined by high-throughput sequencing (HTS). The genome comprises two RNAs that are 5,956 and 3,808 nt long, excluding the 3'-end poly-A tails, both coding for a single large polyprotein. The RNA1 polyprotein contains five conserved domains associated with replication, while the RNA2 polyprotein is cleaved into the movement protein and coat protein. PSV-B is representative of a new species in the subgenus Cholivirus (genus Sadwavirus; family Secoviridae), as the level of amino acid sequence identity to recognized members of this subgenus in the Pro-Pol and coat protein regions is below currently valid species demarcation thresholds.

Indexed as

AnanasSecoviridaeGenome, ViralPhylogenyPolyproteinsRNA, ViralPolyproteinsRNA, Viral

Identifiers

PMID36269415
PMCPMC9741570
OpenAlexW4306952018

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.