Evidence map›Paper›PMID 36268110›Full record

ArticleJournal of pathology informatics2022

Development and technical validation of an artificial intelligence model for quantitative analysis of histopathologic features of eosinophilic esophagitis.

Luisa Ricaurte Archila, Lindsey Smith, Hanna-Kaisa Sihvo, Thomas Westerling-Bui, Ville Koponen, Donnchadh M O'Sullivan, Maria Camila Cardenas Fernandez, Erin E Alexander, Yaohong Wang, Priyadharshini Sivasubramaniam and 10 more

Abstract read
In one paragraph

Article in Journal of pathology informatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Review
  9. Development and dysfunction of structural cells in eosinophilic esophagitis.The Journal of allergy and clinical immunology · 2024
    Review
  10. Article
  11. Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation.Proceedings of SPIE--the International Society for Optical Engineering · 2024
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Luisa Ricaurte ArchilaDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Lindsey SmithAiforia Technologies, Worcester, MA, USA.
Hanna-Kaisa SihvoAiforia Technologies, Helsinki, Finland.
Thomas Westerling-BuiAiforia Technologies, Helsinki, Finland.
Ville KoponenAiforia Technologies, Helsinki, Finland.
Donnchadh M O'SullivanDepartment of Pediatric and Adolescence Medicine, Mayo Clinic Rochester, MN, USA.
Maria Camila Cardenas FernandezDepartment of Pediatric and Adolescence Medicine, Mayo Clinic Rochester, MN, USA.
Erin E AlexanderDepartment of Gastroenterology and Hepatology, Mayo Clinic Rochester, MN, USA.
Yaohong WangDepartment of Pathology, Vanderbilt University Medical Center, Nashville, TN, USA.
Priyadharshini SivasubramaniamDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Ameya PatilDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Puanani E HopsonDepartment of Gastroenterology and Hepatology, Mayo Clinic Rochester, MN, USA.
Imad AbsahDepartment of Gastroenterology and Hepatology, Mayo Clinic Rochester, MN, USA.
Karthik RaviDivision of Pediatric Gastroenterology and Hepatology, Mayo Clinic Rochester, MN, USA.
Taofic MounajjedDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Rish PaiDepartment of Laboratory Medicine and Pathology, Mayo Clinic Scottsdale, AZ, USA.
Catherine HagenDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Christopher HartleyDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Rondell P GrahamDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Roger K MoreiraDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: In an attempt to provide quantitative, reproducible, and standardized analyses in cases of eosinophilic esophagitis (EoE), we have developed an artificial intelligence (AI) digital pathology model for the evaluation of histologic features in the EoE/esophageal eosinophilia spectrum. Here, we describe the development and technical validation of this novel AI tool. Methods: A total of 10 726 objects and 56.2 mm Results: The performance of the AI model for all cell type features was similar/non-inferior to that of our group of GI pathologists (F1-scores: 94.5-94.8 for AI vs human and 92.6-96.0 for human vs human). Segmentation area features were rated for accuracy using the following scale: 1. "perfect or nearly perfect" (95%-100%, no significant errors), 2. "very good" (80%-95%, only minor errors), 3. "good" (70%-80%, significant errors but still captures the feature well), 4. "insufficient" (less than 70%, significant errors compromising feature recognition). Rating scores for tissue (1.01), spongiosis (1.15), basal layer (1.05), surface layer (1.04), lamina propria (1.15), and collagen (1.11) were in the "very good" to "perfect or nearly perfect" range, while degranulation (2.23) was rated between "good" and "very good". Conclusion: Our newly developed AI-based tool showed an excellent performance (non-inferior to a group of experienced GI pathologists) for the recognition of various histologic features in the EoE/esophageal mucosal eosinophilia spectrum. This tool represents an important step in creating an accurate and reproducible method for semi-automated quantitative analysis to be used in the evaluation of esophageal biopsies in this clinical context.

Indexed as

Artificial intelligenceDeep learningDigital pathologyEoEEosinophilic esophagitisEosinophils

Identifiers

PMID36268110
PMCPMC9577132

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.