Evidence map›Paper›PMID 36268099›Full record

ArticleJournal of pathology informatics2022

Computer-aided scoring of

Alyson Yoder, Landon J Inge, Chen-Chun Chen, Vijay R Marati, Trung Kien Nguyen, Karel Zuiderveld, Jim Martin, Sarah Gladden, Mohammad Saleh Miri, Raghavan Venugopal and 3 more

Open access · goldAbstract read
In one paragraph

Article in Journal of pathology informatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
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  5. Image analysis for bright-field HER2 in situ hybridization: validation for clinical use.Virchows Archiv : an international journal of pathology · 2025
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Alyson YoderVentana Medical Systems, Inc., Tucson, AZ, USA.
Landon J IngeVentana Medical Systems, Inc., Tucson, AZ, USA.
Chen-Chun ChenVentana Medical Systems, Inc., Tucson, AZ, USA.
Vijay R MaratiVentana Medical Systems, Inc., Tucson, AZ, USA.
Trung Kien NguyenVentana Medical Systems, Inc., Tucson, AZ, USA.
Karel ZuiderveldVentana Medical Systems, Inc., Tucson, AZ, USA.
Jim MartinVentana Medical Systems, Inc., Tucson, AZ, USA.
Sarah GladdenVentana Medical Systems, Inc., Tucson, AZ, USA.
Mohammad Saleh MiriVentana Medical Systems, Inc., Tucson, AZ, USA.
Raghavan VenugopalVentana Medical Systems, Inc., Tucson, AZ, USA.
Bryan LopezVentana Medical Systems, Inc., Tucson, AZ, USA.
Jim Ranger-MooreVentana Medical Systems, Inc., Tucson, AZ, USA.
Christoph GuetterVentana Medical Systems, Inc., Tucson, AZ, USA.
Ventana Research Corporation (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Identification of HER2 protein overexpression and/or amplification of the Methods: To assist pathologists, we have developed the uPath HER2 Dual ISH Image Analysis for Breast (uPath HER2 DISH IA) algorithm, as an adjunctive aid in the determination of Results: The positive percent agreement (PPA) and negative percent agreement (NPA) rates for image analysis (IA) vs GT were 97.2% (95% confidence interval [CI]: 95.0, 99.3) and 94.3% (95% CI: 90.8, 97.3) respectively. Comparison of agreement rates showed that the lower bounds of the 95% CIs for the difference of PPA and NPA for IA vs MR were -0.9% and -6.2%, respectively. Further, inter- and intra-reader agreement rates in the IA method were observed with point estimates of at least 96.7%. Conclusions: Overall, our data show that the uPath HER2 DISH IA is non-inferior to manual scoring and supports its use as an aid for pathologists in routine diagnosis of breast cancer.

Indexed as

AlgorithmBreast cancerBright-field ISHHER2Image analysis

Identifiers

PMID36268099
PMCPMC9577051
OpenAlexW4283818498

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.