Evidence map›Paper›PMID 36267781›Full record

ArticleAnnals of translational medicine2022

Bioinformatics analysis of genomic and immune infiltration patterns in autism spectrum disorder.

Ru-Qiong Wei, Wen-Liang Guo, Yin-Teng Wu, Raquel Alarcòn Rodrìguez, Marìa Del Mar Requena Mullor, Yu-Chang Gui, Jian-Wen Xu

Open access · diamondAbstract read
In one paragraph

Article in Annals of translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ru-Qiong Wei *Department of Rehabilitation Medicine, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Wen-Liang Guo *Guangxi Medical University, Nanning, China.
Yin-Teng WuGuangxi Medical University, Nanning, China.
Raquel Alarcòn RodrìguezFaculty of Health Sciences, University of Almerìa, Almeria, Spain.
Marìa Del Mar Requena MullorFaculty of Health Sciences, University of Almerìa, Almeria, Spain.
Yu-Chang GuiDepartment of Rehabilitation Medicine, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Jian-Wen XuDepartment of Rehabilitation Medicine, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.
Guangxi Medical University · CNUniversity of Almería · ESFirst Affiliated Hospital of GuangXi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Autism spectrum disorder (ASD) is a specific type of pervasive developmental disorder, and most studies suggest that the onset of autism may be related to genetic and immune factors. The etiology of autism and the underlying molecular events need to be further addressed. Methods: The ASD-related dataset GSE18123 was downloaded from the Gene Expression Omnibus (GEO) database. Gene set enrichment analysis (GSEA) was used to screen for Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways that may be associated with autism. The top 5,000 genes with an absolute median difference were obtained, and a co-expression network was constructed using weighted correlation network analysis (WGCNA). In addition, GO and KEGG enrichment analyses were performed for genes in the modules most closely related to ASD. Hub genes were found in the significant modules, and the expression values and receiver operating characteristic (ROC) curves of the hub genes were analyzed and validated. Immune cell infiltration in ASD was calculated using the CIBERSORT algorithm, and the relationship between hub genes and immune cells was analyzed. Finally, GSEA was used to explore the potential pathways of hub genes affecting ASD. Results: The 5,000 DEGs were divided into eight significant modules by WGCNA. The green module was most significantly associated with ASD, and two hub genes [fatty acid-binding protein 2 ( Conclusions: FABP2 and JAK2 may influence the immune microenvironment of ASD by regulating immune cells and immune-related pathways and are candidate molecular markers for the development of ASD.

Indexed as

Autism spectrum disorder (ASD)CIBERSORTimmune cell infiltration

Identifiers

PMID36267781
PMCPMC9577768
OpenAlexW4298008165

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.