Evidence map›Paper›PMID 36266784›Full record

ArticlePsychiatry and clinical neurosciences2023

The genome-wide DNA methylation profiles among neurosurgery patients with and without post-operative delirium.

Takehiko Yamanashi, Kaitlyn J Crutchley, Nadia E Wahba, Takaaki Nagao, Pedro S Marra, Cade C Akers, Eleanor J Sullivan, Masaaki Iwata, Mathew A Howard, Hyunkeun R Cho and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Psychiatry and clinical neurosciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Takehiko YamanashiDepartment of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Palo Alto, California, USA.ORCID https://orcid.org/0000-0002-3881-8997
Kaitlyn J CrutchleyDepartment of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Nadia E WahbaDepartment of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Takaaki NagaoDepartment of Neurosurgery, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Pedro S MarraDepartment of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Cade C AkersDepartment of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Eleanor J SullivanDepartment of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Masaaki IwataDepartment of Neuropsychiatry, Tottori University Faculty of Medicine, Tottori, Japan.ORCID https://orcid.org/0000-0002-6143-0181
Mathew A HowardDepartment of Neurosurgery, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Hyunkeun R ChoCollege of Public Health, University of Iowa, Iowa City, Iowa, USA.
Hiroto KawasakiDepartment of Neurosurgery, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Christopher G HughesDepartment of Anesthesiology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Pratik P PandharipandeDepartment of Anesthesiology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Marco M HeftiDepartment of Pathology, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Gen ShinozakiDepartment of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Palo Alto, California, USA.ORCID https://orcid.org/0000-0001-6129-2789
University of Iowa · USVanderbilt University Medical Center · USTottori University of Environmental Studies · JP

Funding

Identification of Epigenetics Correlates between Brain and Peripheral TissuesR01MH119165 · NIMH · UNIVERSITY OF IOWA · PI SHINOZAKI, GEN · 2020 to 2024
$3.0M
Novel tau-based diagnostics for neonatal hypoxic-ischemic injuryK23NS109284 · NINDS · UNIVERSITY OF IOWA · PI HEFTI, MARCO MATTHIAS · 2019 to 2023
$950k
NIMH NIH HHS R01 MH119165NINDS NIH HHS K23 NS109284
6 · The paper itself

Abstract

aimsThere is no previous study demonstrating the differences of genome-wide DNA methylation (DNAm) profiles between patients with and without postoperative delirium (POD). We aimed to discover epigenetic (DNAm) markers that are associated with POD in blood obtained from patients before and after neurosurgery.

methodsPre- and post-surgical blood DNA samples from 37 patients, including 10 POD cases, were analyzed using the Illumina EPIC array genome-wide platform. We examined DNAm differences in blood from patients with and without POD. Enrichment analysis with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes terms were also conducted.

resultsWhen POD cases were tested for DNAm change before and after surgery, enrichment analyses showed many relevant signals with statistical significance in immune response related-pathways and inflammatory cytokine related-pathways such as "cellular response to cytokine stimulus", "regulation of immune system process", "regulation of cell activation", and "regulation of cytokine production". Furthermore, after excluding the potential effect of common factors related to surgery and anesthesia between POD cases and non-POD controls, the enrichment analyses showed significant signals such as "immune response" and "T cell activation", which are same pathways previously identified from an independent non-surgical inpatient cohort.

conclusionsOur first genome-wide DNAm investigation of POD showed promising signals related to immune response, inflammatory response and other relevant signals considered to be associated with delirium pathophysiology. Our data supports the hypothesis that epigenetics play an important role in the pathophysiological mechanism of delirium and suggest the potential usefulness of an epigenetics-based biomarker of POD.

Indexed as

Emergence DeliriumNeurosurgeryBiomarkersDNA MethylationEpigenesis, GeneticHumansBiomarkersdeliriumDNA methylationepigeneticsgenome-widepost-operative delirium

Identifiers

PMID36266784
PMCPMC9812874
OpenAlexW4306936830

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.