Evidence map›Paper›PMID 36266567›Full record

ArticleCommunications biology2022

The roles of two extracellular loops in proton sensing and permeation in human Otop1 proton channel.

Bin Li, Yan Wang, Alexis Castro, Courtney Ng, Zhifei Wang, Haroon Chaudhry, Zainab Agbaje, Gabriella A Ulloa, Yong Yu

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Adaptive Responses of Large Yellow CroakerAntioxidants (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Transcendent Aspects of Proton Channels.Annual review of physiology · 2024
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Bin Li *Department of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Yan Wang *Department of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Alexis CastroDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Courtney NgDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Zhifei WangDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Haroon ChaudhryDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Zainab AgbajeDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Gabriella A UlloaDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA.
Yong YuDepartment of Biological Sciences, St. John's University, Queens, NY, 11439, USA. yuy2@stjohns.edu.ORCID 0000-0002-1849-0779
St. John's University · US

Funding

Ion Channel Function and Regulation of the Polycystin-1/2 Complex in Kidney Physiology and Polycystic Kidney DiseaseR01DK125404 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI QIAN, FENG, YU, YONG · 2020 to 2024
$2.7M
NIDDK NIH HHS R01 DK125404U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1R01DK125404
6 · The paper itself

Abstract

Otopetrin (Otop) proteins were recently found to function as proton channels, with Otop1 revealed to be the sour taste receptor in mammals. Otop proteins contain twelve transmembrane segments (S1-S12) which are divided into structurally similar N and C domains. The mechanisms by which Otop channels sense extracellular protons to initiate gating and conduct protons once the channels are activated remains largely elusive. Here we show that two extracellular loops are playing key roles in human Otop1 channel function. We find that residue H229 in the S5-S6 loop is critical for proton sensing of Otop1. Further, our data reveal that the S11-12 loop is structurally and functionally essential for the Otop1 channel and that residue D570 in this loop regulates proton permeation into the pore formed by the C domain. This study sheds light on the molecular mechanism behind the structure and function of this newly identified ion channel family.

Indexed as

Ion ChannelsPhosphoproteinsProtonsHumansMembrane ProteinsIon ChannelsMembrane ProteinsOTOP1 protein, humanPhosphoproteinsProtons

Identifiers

PMID36266567
PMCPMC9585144
OpenAlexW4306947948

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.