Evidence map›Paper›PMID 36266535›Full record

ArticleCommunications biology2022

Expression of divergent methyl/alkyl coenzyme M reductases from uncultured archaea.

Nana Shao, Yu Fan, Chau-Wen Chou, Shadi Yavari, Robert V Williams, I Jonathan Amster, Stuart M Brown, Ian J Drake, Evert C Duin, William B Whitman and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Respiration-driven methanotrophic growth of diverse marine methanogens.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. The methanogen core and pangenome: conservation and variability across biology's growth temperature extremes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Nana ShaoDepartment of Microbiology, University of Georgia, Athens, GA, USA.ORCID 0000-0003-3565-885X
Yu FanEMTEC IT, ExxonMobil Technical Computing Company, Annandale, NJ, USA.
Chau-Wen ChouDepartment of Chemistry, University of Georgia, Athens, GA, USA.
Shadi YavariDepartment of Chemistry and Biochemistry, Auburn University, Auburn, AL, USA.
Robert V WilliamsDepartment of Chemistry, University of Georgia, Athens, GA, USA.
I Jonathan AmsterDepartment of Chemistry, University of Georgia, Athens, GA, USA.ORCID 0000-0001-7523-5144
Stuart M BrownEnergy Sciences, ExxonMobil Technology & Engineering Company, Annandale, NJ, USA.
Ian J DrakeBiomedical Sciences, ExxonMobil Technology & Engineering Company, Annandale, NJ, USA.
Evert C DuinDepartment of Chemistry and Biochemistry, Auburn University, Auburn, AL, USA.
William B WhitmanDepartment of Microbiology, University of Georgia, Athens, GA, USA. whitman@uga.edu.ORCID 0000-0003-1229-0423
Yuchen LiuEnergy Sciences, ExxonMobil Technology & Engineering Company, Annandale, NJ, USA. yuchen.liu@exxonmobil.com.ORCID 0000-0003-0842-5882
University of Georgia · USExxonMobil (United States) · USAuburn University · US

Funding

12 T FTICR-MS System for the Analysis of MetabolitesS10OD025118 · OD · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2018 to 2018
$2.0M
Purchase of a Thermo Fisher Scientific LTQ Orbitrap XL Mass SpectrometerS10RR028859 · NCRR · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2011 to 2011
$832k
NCRR NIH HHS S10 RR028859NIH HHS S10 OD025118
6 · The paper itself

Abstract

Methanogens and anaerobic methane-oxidizing archaea (ANME) are important players in the global carbon cycle. Methyl-coenzyme M reductase (MCR) is a key enzyme in methane metabolism, catalyzing the last step in methanogenesis and the first step in anaerobic methane oxidation. Divergent mcr and mcr-like genes have recently been identified in uncultured archaeal lineages. However, the assembly and biochemistry of MCRs from uncultured archaea remain largely unknown. Here we present an approach to study MCRs from uncultured archaea by heterologous expression in a methanogen, Methanococcus maripaludis. Promoter, operon structure, and temperature were important determinants for MCR production. Both recombinant methanococcal and ANME-2 MCR assembled with the host MCR forming hybrid complexes, whereas tested ANME-1 MCR and ethyl-coenzyme M reductase only formed homogenous complexes. Together with structural modeling, this suggests that ANME-2 and methanogen MCRs are structurally similar and their reaction directions are likely regulated by thermodynamics rather than intrinsic structural differences.

Indexed as

ArchaeaMesnaMethaneOxidoreductasesMesnaMethanemethyl coenzyme M reductaseOxidoreductases

Identifiers

PMID36266535
PMCPMC9584954
OpenAlexW4306878720

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.