Evidence map›Paper›PMID 36264825›Full record

ArticleScience (New York, N.Y.)2022

Multiple lineages of monkeypox virus detected in the United States, 2021-2022.

Crystal M Gigante, Bette Korber, Matthew H Seabolt, Kimberly Wilkins, Whitni Davidson, Agam K Rao, Hui Zhao, Todd G Smith, Christine M Hughes, Faisal Minhaj and 22 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 179 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Predicting vaccine effectiveness for mpox.Nature communications · 2024
    Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Six Cases of Borealpox and Evidence of a Zoonotic Source: Alaska, 2020-2023.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
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  11. Review
  12. Article
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  18. Article
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119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors.

Crystal M GiganteNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-2169-7156
Bette KorberT-6: Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, USA; New Mexico Consortium, Los Alamos, NM, USA.ORCID 0000-0002-2026-5757
Matthew H SeaboltNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-0336-5545
Kimberly WilkinsNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-0346-7656
Whitni DavidsonNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0003-3372-7903
Agam K RaoNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Hui ZhaoNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-3816-7733
Todd G SmithNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Christine M HughesNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-0177-2454
Faisal MinhajNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0001-8435-7362
Michelle A WaltenburgNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-8095-1433
James TheilerISR-3: Space Data Science and Systems, Los Alamos National Laboratory, Los Alamos, NM, USA.ORCID 0000-0003-1888-3684
Sandra SmoleMassachusetts Department of Public Health, Jamaica Plain, MA, USA.ORCID 0000-0001-9414-8521
Glen R GallagherMassachusetts Department of Public Health, Jamaica Plain, MA, USA.ORCID 0000-0001-6837-9473
David BlytheInfectious Disease Epidemiology and Outbreak Response Bureau, Maryland Department of Health, Baltimore, MD, USA.ORCID 0000-0002-9875-8113
Robert MyersInfectious Disease Epidemiology and Outbreak Response Bureau, Maryland Department of Health, Baltimore, MD, USA.ORCID 0000-0002-6468-9113
Joann SchulteDallas County Health and Human Services Public Health Laboratory, Dallas, Texas, USA.
Joey StringerDallas County Health and Human Services Public Health Laboratory, Dallas, Texas, USA.ORCID 0000-0001-6220-9481
Philip LeeFlorida Department of Health Bureau of Public Health Laboratories-Jacksonville, Jacksonville, FL, USA.
Rafael M MendozaFlorida Department of Health in Broward County, Hollywood, FL, USA.
LaToya A Griffin-ThomasVirginia Department of General Services, Division of Consolidated Laboratory Services, Richmond, VA, USA.ORCID 0000-0002-1575-7896
Jenny CrainVirginia Department of Health, Richmond, VA, USA.ORCID 0000-0001-5683-7991
Jade MurrayUtah Department of Health and Human Services, Salt Lake City, UT, USA.
Annette AtkinsonUtah Department of Health and Human Services, Salt Lake City, UT, USA.
Anthony H GonzalezSacramento County Public Health, Sacramento, CA, USA.
June NashSacramento County Public Health, Sacramento, CA, USA.ORCID 0000-0003-3685-3542
Dhwani BatraNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-6789-6396
Inger DamonNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Jennifer McQuistonNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0001-8324-4665
Christina L HutsonNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Andrea M McCollumNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0002-9136-818X
Yu LiNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0001-8815-6816

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

Monkeypox is a viral zoonotic disease endemic in Central and West Africa. In May 2022, dozens of non-endemic countries reported hundreds of monkeypox cases, most with no epidemiological link to Africa. We identified two lineages of monkeypox virus (MPXV) among two 2021 and seven 2022 US monkeypox cases: the major 2022 outbreak variant called B.1 and a minor contemporaneously sampled variant called A.2. Analyses of mutations among these two variants revealed an extreme preference for GA-to-AA mutations indicative of human APOBEC3 cytosine deaminase activity among Clade IIb MPXV (previously West African, Nigeria) sampled since 2017. Such mutations were not enriched within other MPXV clades. These findings suggest that APOBEC3 editing may be a recurrent and a dominant driver of MPXV evolution within the current outbreak.

Indexed as

APOBEC DeaminasesHost-Pathogen InteractionsMonkeypox virusMpox, MonkeypoxRNA EditingAdenosineCytidineEvolution, MolecularHumansMutationNigeriaUnited StatesAdenosineAPOBEC3 proteins, humanAPOBEC DeaminasesCytidine

Identifiers

PMID36264825
PMCPMC10258808

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.