Evidence map›Paper›PMID 36264642›Full record

ArticleThe Journal of clinical investigation2022

Rapalogs downmodulate intrinsic immunity and promote cell entry of SARS-CoV-2.

Guoli Shi, Abhilash I Chiramel, Tiansheng Li, Kin Kui Lai, Adam D Kenney, Ashley Zani, Adrian C Eddy, Saliha Majdoul, Lizhi Zhang, Tirhas Dempsey and 6 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 44 citations in OpenAlex.

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  12. Evolution of a fuzzy ribonucleoprotein complex in viral assembly.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. IFITM1 and IFITM3 cooperate to restrict virus entry in endolysosomes.bioRxiv : the preprint server for biology · 2025
    Article
  16. ELV-N34, RvD6-Isomer, or NPD1 Halt Replication of SARS-CoV-2 Omicron BA.5 Virus in Human Lung and Nasal Cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  17. Observational
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Guoli ShiHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute (NCI), NIH, Frederick, Maryland, USA.
Abhilash I ChiramelLaboratory of Virology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Hamilton, Montana, USA.
Tiansheng LiLaboratory of Viral Diseases, NIAID, NIH, Bethesda, Maryland, USA.
Kin Kui LaiHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute (NCI), NIH, Frederick, Maryland, USA.
Adam D KenneyDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Ashley ZaniDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Adrian C EddyDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Saliha MajdoulHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute (NCI), NIH, Frederick, Maryland, USA.
Lizhi ZhangDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Tirhas DempseyHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute (NCI), NIH, Frederick, Maryland, USA.
Paul A BeareLaboratory of Bacteriology, Rocky Mountain Laboratories, NIAID, NIH, Hamilton, Montana, USA.
Swagata KarBioqual, Rockville, Maryland, USA.
Jonathan W YewdellLaboratory of Viral Diseases, NIAID, NIH, Bethesda, Maryland, USA.
Sonja M BestLaboratory of Virology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Hamilton, Montana, USA.
Jacob S YountDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Alex A ComptonHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute (NCI), NIH, Frederick, Maryland, USA.
Center for Cancer Research · USThe Ohio State University · USNational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · USBioqual · US

Funding

Mechanisms of innate resistance to virus infectionsR01AI130110 · NIAID · OHIO STATE UNIVERSITY · PI Jacob Yount · 2017 to 2026
$4.3M
Mechanistic characterization of a new master regulator of cardiac virus infectionsR01HL154001 · NHLBI · OHIO STATE UNIVERSITY · PI ACCORNERO, FEDERICA, YOUNT, JACOB · 2020 to 2023
$2.3M
Interdisciplinary Program in Microbe-Host BiologyT32AI165391 · NIAID · OHIO STATE UNIVERSITY · PI RAJENDAR K DEORA, Daniel J Wozniak · 2022 to 2026
$1.5M
Inhibition of cell-to-cell fusion by interferon-induced proteinsR21AI142256 · NIAID · OHIO STATE UNIVERSITY · PI YOUNT, JACOB · 2019 to 2020
$429k
Establishing a relevant mouse model with susceptibility to non-adapted influenza viruses for vaccine challenge studiesR21AI151230 · NIAID · OHIO STATE UNIVERSITY · PI YOUNT, JACOB · 2020 to 2021
$409k
NHLBI NIH HHS R01 HL154001NIAID NIH HHS R01 AI130110NIAID NIH HHS R21 AI142256NIAID NIH HHS R21 AI151230NIAID NIH HHS T32 AI165391
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in immunocompromised individuals is associated with prolonged virus shedding and evolution of viral variants. Rapamycin and its analogs (rapalogs, including everolimus, temsirolimus, and ridaforolimus) are FDA approved as mTOR inhibitors for the treatment of human diseases, including cancer and autoimmunity. Rapalog use is commonly associated with an increased susceptibility to infection, which has been traditionally explained by impaired adaptive immunity. Here, we show that exposure to rapalogs increased susceptibility to SARS-CoV-2 infection in tissue culture and in immunologically naive rodents by antagonizing the cell-intrinsic immune response. We identified 1 rapalog (ridaforolimus) that was less potent in this regard and demonstrated that rapalogs promote spike-mediated entry into cells, by triggering the degradation of the antiviral proteins IFITM2 and IFITM3 via an endolysosomal remodeling program called microautophagy. Rapalogs that increased virus entry inhibited mTOR-mediated phosphorylation of the transcription factor TFEB, which facilitated its nuclear translocation and triggered microautophagy. In rodent models of infection, injection of rapamycin prior to and after virus exposure resulted in elevated SARS-CoV-2 replication and exacerbated viral disease, while ridaforolimus had milder effects. Overall, our findings indicate that preexisting use of certain rapalogs may elevate host susceptibility to SARS-CoV-2 infection and disease by activating lysosome-mediated suppression of intrinsic immunity.

Indexed as

COVID-19SARS-CoV-2HumansImmunity, InnateMembrane ProteinsMTOR InhibitorsRNA-Binding ProteinsSirolimusVirus InternalizationIFITM2 protein, humanIFITM3 protein, humanMembrane ProteinsMTOR InhibitorsridaforolimusRNA-Binding ProteinsSirolimusAutophagyCOVID-19Innate immunityLysosomes

Identifiers

PMID36264642
PMCPMC9753997
OpenAlexW4306888757

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.