Evidence map›Paper›PMID 36264623›Full record

ArticleeLife2022

Didemnin B and ternatin-4 differentially inhibit conformational changes in eEF1A required for aminoacyl-tRNA accommodation into mammalian ribosomes.

Manuel F Juette, Jordan D Carelli, Emily J Rundlet, Alan Brown, Sichen Shao, Angelica Ferguson, Michael R Wasserman, Mikael Holm, Jack Taunton, Scott C Blanchard

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Structural mechanism of mRNA decoding by mammalian GTPase GTPBP1.bioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Genome-wide analysis of the soybeanFrontiers in plant science · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Manuel F Juette *Department of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.ORCID 0000-0002-8760-8080
Jordan D Carelli *Chemistry and Chemical Biology Graduate Program, University of California, San Francisco, San Francisco, United States.ORCID 0000-0001-7625-7505
Emily J Rundlet *Department of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.ORCID 0000-0003-4041-6206
Alan BrownMRC-LMB, Francis Crick Avenue, Cambridge, United Kingdom.ORCID 0000-0002-0021-0476
Sichen ShaoMRC-LMB, Francis Crick Avenue, Cambridge, United Kingdom.ORCID 0000-0003-2679-5537
Angelica FergusonDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.
Michael R WassermanDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.
Mikael HolmDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.
Jack TauntonChemistry and Chemical Biology Graduate Program, University of California, San Francisco, San Francisco, United States.
Scott C BlanchardDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.ORCID 0000-0003-2717-9365
Cornell University · USSt. Jude Children's Research Hospital · USUniversity of California, San Francisco · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Imaging Protein Synthesis on the Ribosome using Single-Molecule FRETR01GM079238 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLANCHARD, SCOTT C · 2006 to 2023
$7.0M
Tri-Institutional PhD Program in Chemical BiologyT32GM115327 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI TAN, DEREK S · 2015 to 2019
$741k
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM079238NIGMS NIH HHS T32 GM115327
6 · The paper itself

Abstract

Rapid and accurate mRNA translation requires efficient codon-dependent delivery of the correct aminoacyl-tRNA (aa-tRNA) to the ribosomal A site. In mammals, this fidelity-determining reaction is facilitated by the GTPase elongation factor-1 alpha (eEF1A), which escorts aa-tRNA as an eEF1A(GTP)-aa-tRNA ternary complex into the ribosome. The structurally unrelated cyclic peptides didemnin B and ternatin-4 bind to the eEF1A(GTP)-aa-tRNA ternary complex and inhibit translation but have different effects on protein synthesis in vitro and in vivo. Here, we employ single-molecule fluorescence imaging and cryogenic electron microscopy to determine how these natural products inhibit translational elongation on mammalian ribosomes. By binding to a common site on eEF1A, didemnin B and ternatin-4 trap eEF1A in an intermediate state of aa-tRNA selection, preventing eEF1A release and aa-tRNA accommodation on the ribosome. We also show that didemnin B and ternatin-4 exhibit distinct effects on the dynamics of aa-tRNA selection that inform on observed disparities in their inhibition efficacies and physiological impacts. These integrated findings underscore the value of dynamics measurements in assessing the mechanism of small-molecule inhibition and highlight potential of single-molecule methods to reveal how distinct natural products differentially impact the human translation mechanism.

Indexed as

Biological ProductsRNA, Transfer, Amino AcylAnimalsAnthocyaninsCodonDepsipeptidesGuanosine TriphosphateHumansMammalsPeptide Elongation Factor TuPeptides, CyclicRibosomesAnthocyaninsBiological ProductsCodonDepsipeptidesdidemninsGuanosine TriphosphatePeptide Elongation Factor TuPeptides, CyclicRNA, Transfer, Amino Acylternatin 4biochemistrychemical biologyDidemnineEF1Ahumano. cuniculusribosomesmFRETTernatin

Identifiers

PMID36264623
PMCPMC9584604
OpenAlexW4306911756

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.