Evidence map›Paper›PMID 36263894›Full record

ArticleThe plant genome2022

Genome-wide association mapping for field and seedling resistance to the emerging Puccinia graminis f. sp. tritici race TTRTF in wheat.

Tamrat Negash, Erena Aka Edae, Lidiya Tilahun, James A Anderson, Matthew N Rouse, Prabin Bajgain

Open access · goldAbstract read
In one paragraph

Article in The plant genome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Tamrat NegashEthiopian Institute of Agricultural Research, Kulumsa, Ethiopia.
Erena Aka EdaeDep. of Plant Pathology, Univ. of Minnesota, St. Paul, MN, USA.ORCID 0000-0003-0892-0285
Lidiya TilahunEthiopian Institute of Agricultural Research, Kulumsa, Ethiopia.ORCID 0000-0003-4561-9029
James A AndersonDep. of Agronomy and Plant Genetics, Univ. of Minnesota, St. Paul, MN, USA.ORCID 0000-0003-4655-6517
Matthew N RouseDep. of Plant Pathology, Univ. of Minnesota, St. Paul, MN, USA.ORCID 0000-0001-7763-8203
Prabin BajgainDep. of Agronomy and Plant Genetics, Univ. of Minnesota, St. Paul, MN, USA.ORCID 0000-0002-3093-5582
University of Minnesota · USEthiopian Institute of Agricultural Research · ET

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stem rust of wheat (Triticum spp.), caused by Puccinia graminis f. sp. tritici (Pgt), is one of the most impactful wheat diseases because of its threat to global wheat production. While disease mitigation has primarily been achieved through the deployment of resistant wheat varieties, emerging new virulent races continue to pose risks to the crop. For example, races such as Ug99 (TTKSK), TKTTF, and TTRTF have caused epidemics in different wheat growing regions of the world in recent years. A continual search for new and effective sources of resistance is therefore necessary to safeguard wheat production. This study assessed a breeding panel from the Ethiopian Institute of Agricultural Research (EIAR) wheat breeding program for seedling and field plant resistance to TTRTF and reports genomic regions conferring resistance to TTRTF. Trait correlations (r) were medium to strong (range = .38-.71) and heritabilities were moderate (.32-.56). Association analysis for resistance to TTRTF resulted in detection of 20 markers in 11 chromosomes; the marker S1B_175439851 was associated with resistance at both seedling and adult plant stages. Models with two to four QTL combinations reduced seedling and field disease severity by 12-48 and 9-17%, respectively. Genomic prediction for TTRTF resistance resulted in low to moderately-high predictions (mean correlations of .25-.47). Identification of resistant lines and QTL in the EIAR population is expected to assist in selection toward improved resistance to TTRTF. Specifically, the application of genomic selection (GS) in identifying resistant lines in future related breeding populations will further assist breeding efforts against this new stem rust pathogen race.

Indexed as

BasidiomycotaTriticumDisease ResistanceGenome-Wide Association StudyPlant BreedingPlant DiseasesPucciniaSeedlings

Identifiers

PMID36263894
PMCPMC12807250
OpenAlexW4306871378

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.