Evidence map›Paper›PMID 36261543›Full record

ArticleScientific reports2022

Gut microbiome diversity of porcine peritonitis model of sepsis.

Miroslava Chalupova, Jan Horak, Lenka Kramna, Lukas Nalos, Milan Stengl, Katerina Chudejova, Lucie Kraftova, Ondrej Cinek, Pavel Klein, Martin Matejovic and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Miroslava ChalupovaBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Jan HorakBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Lenka KramnaDepartment of Paediatrics, 2nd Faculty of Medicine, Charles University and University Hospital Motol, Prague, Czech Republic.
Lukas NalosBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Milan StenglBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Katerina ChudejovaBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Lucie KraftovaBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Ondrej CinekDepartment of Paediatrics, 2nd Faculty of Medicine, Charles University and University Hospital Motol, Prague, Czech Republic.
Pavel KleinBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Martin MatejovicBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic.
Jaroslav HrabakBiomedical Center, Faculty Medicine in Pilsen, Charles University, alej. Svobody 76, 323 00, Pilsen, Czech Republic. Jaroslav.Hrabak@lfp.cuni.cz.
Charles University · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Animal models are essential in understanding of the mechanisms of sepsis moreover the development and the assessment of emerging therapies. In clinically relevant porcine model, however, a significant variability in the host response has been observed among animals. Thus, there is a strong demand to better understand the potential sources of this heterogeneity. In this study, we compared faecal microbiome composition of 12 animals. Three samples were collected at different time points from each animal. Bacteriome was subjected to 16S rDNA profiling. A significant difference in bacterial composition was associated with the season (p < 0.001) but not with the sex of the pig (p = 0.28), the timing of sample collection (p = 0.59), or interactions thereof (all p > 0.3). The season batch explained 55% of the total variance in the bacteriome diversity. The season term was highly significant from the high-resolution level of the bacterial amplicon sequencing variants up to the level of phylum. The diversity of the microbiome composition could significantly influence experimental model of sepsis, and studies are warranted to demonstrate the effects of gut microbiome diversity on the host-response. If confirmed, control of the gut microbiome should become a standard part of the pre-clinical sepsis experiments.

Indexed as

Gastrointestinal MicrobiomePeritonitisSepsisAnimalsBacteriaDNA, RibosomalRNA, Ribosomal, 16SSwineDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID36261543
PMCPMC9581925
OpenAlexW4306784465

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.