Evidence map›Paper›PMID 36260083›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2023

Damaging variants in FOXI3 cause microtia and craniofacial microsomia.

Daniel Quiat, Andrew T Timberlake, Justin J Curran, Michael L Cunningham, Barbara McDonough, Maria A Artunduaga, Steven R DePalma, Milagros M Duenas-Roque, Joshua M Gorham, Jonas A Gustafson and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  6. International journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Foxi3Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 14 institutions in 4 countries.

Daniel QuiatDepartment of Cardiology, Boston Children's Hospital, Boston, MA; Department of Pediatrics, Harvard Medical School, Boston, MA; Department of Genetics, Harvard Medical School, Boston, MA.
Andrew T TimberlakeHansjörg Wyss Department of Plastic and Reconstructive Surgery, NYU Langone Medical Center, New York, NY.
Justin J CurranDepartment of Genetics, Harvard Medical School, Boston, MA.
Michael L CunninghamDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Center for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA.
Barbara McDonoughDepartment of Genetics, Harvard Medical School, Boston, MA.
Maria A ArtunduagaRespira Labs, Inc, Mountain View, CA.
Steven R DePalmaDepartment of Genetics, Harvard Medical School, Boston, MA.
Milagros M Duenas-RoqueHospital Edgardo Rebagliati Martins, EsSalud, Lima, Peru.
Joshua M GorhamDepartment of Genetics, Harvard Medical School, Boston, MA.
Jonas A GustafsonDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA.
Usama HamdanGlobal Smile Foundation, Norwood, MA.
Anne V HingDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Center for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA.
Paula Hurtado-VillaPontificia Universidad Javeriana and Centro Médico Imbanaco, Cali, Colombia.
Yamileth NicolauTexas ENT Specialists, Houston, TX.
Gabriel OsornoFacultad de Medicina, Universidad Nacional de Colombia, Bogotá, Colombia.
Harry PachajoaServicio de Genética Médica, Fundación Valle del Lili, Cali, Colombia; Centro de Investigación en Anomalías Congénitas y Enfermedades Raras (CIACER), Universidad Icesi, Cali, Colombia.
Gloria L Porras-HurtadoClinica Comfamiliar Risaralda, Pereira, Colombia.
Lourdes Quintanilla-DieckDepartment of Otolaryngology Head and Neck Surgery, Oregon Health & Science University, Portland, OR.
Luis SerranoAudiocentro, Cuenca, Ecuador.
Melissa TumblinEar Community, Inc, Broomfield, CO.
Ignacio ZaranteHuman Genomics Institute, Pontificia Universidad Javeriana, Bogotá, Colombia; Hospital Universitario San Ignacio, Bogotá, Colombia.
Daniela V LuquettiDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Center for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA.
Roland D EaveyDepartment of Otolaryngology-Head & Neck Surgery, Vanderbilt University Medical Center, Nashville, TN. Electronic address: ron.eavey@vumc.org.
Carrie L HeikeDivision of Craniofacial Medicine, Department of Pediatrics, University of Washington, Seattle, WA; Center for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA. Electronic address: carrie.heike@seattlechildrens.org.
Jonathan G SeidmanDepartment of Genetics, Harvard Medical School, Boston, MA. Electronic address: seidman@genetics.med.harvard.edu.
Christine E SeidmanDepartment of Genetics, Harvard Medical School, Boston, MA; Cardiovascular Division, Brigham and Women's Hospital, Boston, MA; Howard Hughes Medical Institute, Chevy Chase, MD. Electronic address: cseidman@genetics.med.harvard.edu.
Harvard University · USSeattle Children's Hospital · USPontificia Universidad Javeriana · COBoston Children's Hospital · USBrigham and Women's Hospital · USFundación Valle del Lili · COHospital Nacional Cayetano Heredia · PENYU Langone Health · USOregon Health & Science University · USSmile Train · USUniversidad Nacional de Colombia · COUniversity of Cuenca · ECUniversity of Washington · USVanderbilt University Medical Center · US

Funding

RESEARCH METHODS IN PEDIATRICS HEART DISEASET32HL007572 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI Sarah D DE FERRANTI, Jane W. Newburger · 1985 to 2026
$13.0M
Craniofacial Microsomia: Genetic Causes and Pathway DiscoveryU01DE025862 · NIDCR · SEATTLE CHILDREN'S HOSPITAL · PI HEIKE, CARRIE LYN · 2017 to 2021
$3.0M
Planning Grant for Genome-Wide Association Study of Craniofacial MicrosomiaRC1DE020270 · NIDCR · SEATTLE CHILDREN'S HOSPITAL · PI HEIKE, CARRIE LYN, STARR, JACQUELINE R · 2009 to 2010
$955k
Phenotypic and Genomic Characterization of Microtia in the Andean PopulationR00DC011282 · NIDCD · SEATTLE CHILDREN'S HOSPITAL · PI LUQUETTI, DANIELA VARELA · 2013 to 2015
$739k
Howard Hughes Medical InstituteNHLBI NIH HHS T32 HL007572NIDCD NIH HHS R00 DC011282NIDCR NIH HHS RC1 DE020270NIDCR NIH HHS U01 DE025862
6 · The paper itself

Abstract

purposeCraniofacial microsomia (CFM) represents a spectrum of craniofacial malformations, ranging from isolated microtia with or without aural atresia to underdevelopment of the mandible, maxilla, orbit, facial soft tissue, and/or facial nerve. The genetic causes of CFM remain largely unknown.

methodsWe performed genome sequencing and linkage analysis in patients and families with microtia and CFM of unknown genetic etiology. The functional consequences of damaging missense variants were evaluated through expression of wild-type and mutant proteins in vitro.

resultsWe studied a 5-generation kindred with microtia, identifying a missense variant in FOXI3 (p.Arg236Trp) as the cause of disease (logarithm of the odds = 3.33). We subsequently identified 6 individuals from 3 additional kindreds with microtia-CFM spectrum phenotypes harboring damaging variants in FOXI3, a regulator of ectodermal and neural crest development. Missense variants in the nuclear localization sequence were identified in cases with isolated microtia with aural atresia and found to affect subcellular localization of FOXI3. Loss of function variants were found in patients with microtia and mandibular hypoplasia (CFM), suggesting dosage sensitivity of FOXI3.

conclusionDamaging variants in FOXI3 are the second most frequent genetic cause of CFM, causing 1% of all cases, including 13% of familial cases in our cohort.

Indexed as

Congenital MicrotiaGoldenhar SyndromeMicrognathismEarFaceHumansCraniofacial microsomiaEctodermFOXI3MicrotiaNeural crest

Identifiers

PMID36260083
PMCPMC9885525
OpenAlexW4306790322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.