Evidence map›Paper›PMID 36259934›Full record

ArticleG3 (Bethesda, Md.)2022

High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water.

Domitille Jarrige, Sajeet Haridas, Claudine Bleykasten-Grosshans, Muriel Joly, Thierry Nadalig, Martine Sancelme, Stéphane Vuilleumier, Igor V Grigoriev, Pierre Amato, Françoise Bringel

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The complete mitochondrial genome sequences ofMitochondrial DNA. Part B, Resources · 2025
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Domitille JarrigeGénétique Moléculaire, Génomique, Microbiologie (GMGM), Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France.ORCID 0000-0002-0633-8999
Sajeet HaridasLawrence Berkeley National Laboratory, U.S. Department of Energy Joint Genome Institute, Berkeley, CA 94720, USA.ORCID 0000-0002-0229-0975
Claudine Bleykasten-GrosshansGénétique Moléculaire, Génomique, Microbiologie (GMGM), Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France.ORCID 0000-0002-4464-9042
Muriel JolyUniversité Clermont Auvergne, Clermont Auvergne Institut National Polytechnique (INP), Centre National de la Recherche Scientifique (CNRS), Institut de Chimie de Clermont-Ferrand (ICCF), 63000 Clermont-Ferrand, France.ORCID 0000-0002-7060-9618
Thierry NadaligGénétique Moléculaire, Génomique, Microbiologie (GMGM), Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France.ORCID 0000-0002-5476-5960
Martine SancelmeUniversité Clermont Auvergne, Clermont Auvergne Institut National Polytechnique (INP), Centre National de la Recherche Scientifique (CNRS), Institut de Chimie de Clermont-Ferrand (ICCF), 63000 Clermont-Ferrand, France.
Stéphane VuilleumierGénétique Moléculaire, Génomique, Microbiologie (GMGM), Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France.ORCID 0000-0003-2232-7023
Igor V GrigorievLawrence Berkeley National Laboratory, U.S. Department of Energy Joint Genome Institute, Berkeley, CA 94720, USA.ORCID 0000-0002-3136-8903
Pierre AmatoUniversité Clermont Auvergne, Clermont Auvergne Institut National Polytechnique (INP), Centre National de la Recherche Scientifique (CNRS), Institut de Chimie de Clermont-Ferrand (ICCF), 63000 Clermont-Ferrand, France.ORCID 0000-0003-3168-0398
Françoise BringelGénétique Moléculaire, Génomique, Microbiologie (GMGM), Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France.ORCID 0000-0002-4529-5143

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genome of the basidiomycete yeast Dioszegia hungarica strain PDD-24b-2 isolated from cloud water at the summit of puy de Dôme (France) was sequenced using a hybrid PacBio and Illumina sequencing strategy. The obtained assembled genome of 20.98 Mb and a GC content of 57% is structured in 16 large-scale contigs ranging from 90 kb to 5.56 Mb, and another 27.2 kb contig representing the complete circular mitochondrial genome. In total, 8,234 proteins were predicted from the genome sequence. The mitochondrial genome shows 16.2% cgu codon usage for arginine but has no canonical cognate tRNA to translate this codon. Detected transposable element (TE)-related sequences account for about 0.63% of the assembled genome. A dataset of 2,068 hand-picked public environmental metagenomes, representing over 20 Tbp of raw reads, was probed for D. hungarica related ITS sequences, and revealed worldwide distribution of this species, particularly in aerial habitats. Growth experiments suggested a psychrophilic phenotype and the ability to disperse by producing ballistospores. The high-quality assembled genome obtained for this D. hungarica strain will help investigate the behavior and ecological functions of this species in the environment.

Indexed as

BasidiomycotaSaccharomyces cerevisiaeSequence Analysis, DNAWaterWateraeromicrobiologyairborne microorganismscold environmentde novo sequencingDioszegia hungarica strain PDD-24b-2fungal sporefungimitochondrial genometransposable elementsTremellaceae

Identifiers

PMID36259934
PMCPMC9713403

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.