Evidence map›Paper›PMID 36259110›Full record

ArticleBiotechnology and bioengineering2023

Flow cytometric evaluation of yeast-bacterial cell-cell interactions.

Ming Lei, Vikas D Trivedi, Nikhil U Nair, Kyongbum Lee, James A Van Deventer

Open access · greenAbstract read
In one paragraph

Article in Biotechnology and bioengineering, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ming LeiDepartment of Chemical and Biological Engineering, Tufts University, Medford, Massachusetts, USA.ORCID 0000-0002-0275-5605
Vikas D TrivediDepartment of Chemical and Biological Engineering, Tufts University, Medford, Massachusetts, USA.ORCID 0000-0002-2703-8311
Nikhil U NairDepartment of Chemical and Biological Engineering, Tufts University, Medford, Massachusetts, USA.ORCID 0000-0001-7737-1385
Kyongbum LeeDepartment of Chemical and Biological Engineering, Tufts University, Medford, Massachusetts, USA.ORCID 0000-0002-0699-8057
James A Van DeventerDepartment of Chemical and Biological Engineering, Tufts University, Medford, Massachusetts, USA.ORCID 0000-0003-4343-6157
Tufts University · US

Funding

The yeast surface as a platform for inhibitor discoveryR35GM133471 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI James Allen Van Deventer · 2019 to 2026
$3.1M
NIGMS NIH HHS R35 GM133471
6 · The paper itself

Abstract

Synthetic cell-cell interaction systems can be useful for understanding multicellular communities or for screening binding molecules. We adapt a previously characterized set of synthetic cognate nanobody-antigen pairs to a yeast-bacteria coincubation format and use flow cytometry to evaluate cell-cell interactions mediated by binding between surface-displayed molecules. We further use fluorescence-activated cell sorting to enrich a specific yeast-displayed nanobody within a mixed yeast-display population. Finally, we demonstrate that this system supports the characterization of a therapeutically relevant nanobody-antigen interaction: a previously discovered nanobody that binds to the intimin protein expressed on the surface of enterohemorrhagic Escherichia coli. Overall, our findings indicate that the yeast-bacteria format supports efficient evaluation of ligand-target interactions. With further development, this format may facilitate systematic characterization and high-throughput discovery of bacterial surface-binding molecules.

Indexed as

Escherichia coliSaccharomyces cerevisiaeFlow Cytometrycell-cell interactionflow cytometrynanobodyyeast display

Identifiers

PMID36259110
PMCPMC10072783
OpenAlexW4306770601

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.