Evidence map›Paper›PMID 36257931›Full record

ArticleNature communications2022

A synthetic transcription platform for programmable gene expression in mammalian cells.

William C W Chen, Leonid Gaidukov, Yong Lai, Ming-Ru Wu, Jicong Cao, Michael J Gutbrod, Gigi C G Choi, Rachel P Utomo, Ying-Chou Chen, Liliana Wroblewska and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
  6. Review
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  8. Article
  9. Review
  10. Article
  11. Article
  12. Exploring treatment options in cancer: Tumor treatment strategies.Signal transduction and targeted therapy · 2024
    Review
  13. CRISPR Technologies in Chinese Hamster Ovary Cell Line Engineering.International journal of molecular sciences · 2023
    Review
  14. Uncovering the Role ofJournal of the American Chemical Society · 2023
    Article
  15. Engineered PROTAC-CID Systems for Mammalian Inducible Gene Regulation.Journal of the American Chemical Society · 2023
    Article
  16. The evolution of synthetic receptor systems.Nature chemical biology · 2022
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

William C W Chen *Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. William.Chen@usd.edu.ORCID 0000-0002-6891-3557
Leonid Gaidukov *Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Yong Lai *Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Ming-Ru WuSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Jicong CaoSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Michael J GutbrodComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Gigi C G ChoiSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0003-2774-9188
Rachel P UtomoSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Ying-Chou ChenSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Liliana WroblewskaPfizer Inc., Cambridge, MA, 02139, USA.
Manolis KellisComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0001-7113-9630
Lin ZhangPfizer Inc., Andover, MA, 01810, USA.
Ron WeissSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0003-0396-2443
Timothy K LuSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. tim@lugroup.org.
Massachusetts Institute of Technology · USBroad Institute · USPfizer (United States) · USHarvard University · USNational Yang Ming Chiao Tung University · TWUniversity of South Dakota · USWellesley College · US

Funding

MULTIDISCIPLINARY RESEARCH TRAINING IN CARDIOLOGYT32HL007208 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Patrick Thomas Ellinor, David E Sosnovik · 1985 to 2026
$16.1M
Developing high-throughput genetic perturbation strategies for single cells in cancer organoidsU01CA250554 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERGER, BONNIE, YILMAZ, OMER · 2020 to 2022
$2.8M
Role of miR-222 in pathological hypertrophy and heart failureR01HL135886 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI ROSENZWEIG, ANTHONY · 2017 to 2020
$1.7M
NCI NIH HHS U01 CA250554NHLBI NIH HHS R01 HL135886NHLBI NIH HHS T32 HL007208
6 · The paper itself

Abstract

Precise, scalable, and sustainable control of genetic and cellular activities in mammalian cells is key to developing precision therapeutics and smart biomanufacturing. Here we create a highly tunable, modular, versatile CRISPR-based synthetic transcription system for the programmable control of gene expression and cellular phenotypes in mammalian cells. Genetic circuits consisting of well-characterized libraries of guide RNAs, binding motifs of synthetic operators, transcriptional activators, and additional genetic regulatory elements express mammalian genes in a highly predictable and tunable manner. We demonstrate the programmable control of reporter genes episomally and chromosomally, with up to 25-fold more activity than seen with the EF1α promoter, in multiple cell types. We use these circuits to program the secretion of human monoclonal antibodies and to control T-cell effector function marked by interferon-γ production. Antibody titers and interferon-γ concentrations significantly correlate with synthetic promoter strengths, providing a platform for programming gene expression and cellular function in diverse applications.

Indexed as

Interferon-gammaTranscription FactorsAnimalsAntibodies, MonoclonalGene ExpressionGene Regulatory NetworksHumansMammalsSynthetic BiologyTranscription, GeneticAntibodies, MonoclonalInterferon-gammaTranscription Factors

Identifiers

PMID36257931
PMCPMC9579178
OpenAlexW4306708177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.