Evidence map›Paper›PMID 36256644›Full record

ArticlePloS one2022

Quantification of cytosol and membrane proteins in rumen epithelium of sheep with low or high CH4 emission phenotype.

J J Bond, A J Donaldson, S Woodgate, K S Kamath, M J Mckay, D Wheeler, D Tucker, V H Oddy

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

J J BondNSW Department of Primary Industries, Extensive Livestock Industry Centre, Armidale, NSW, Australia.ORCID 0000-0002-2913-9335
A J DonaldsonNSW Department of Primary Industries, Extensive Livestock Industry Centre, Armidale, NSW, Australia.
S WoodgateNSW Department of Primary Industries, Extensive Livestock Industry Centre, Armidale, NSW, Australia.
K S KamathDepartment of Molecular Science, Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia.ORCID 0000-0002-5641-0709
M J MckayDepartment of Molecular Science, Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW, Australia.
D WheelerNSW Department of Primary Industries, Orange Agricultural Institute, Orange, NSW, Australia.
D TuckerNSW Department of Primary Industries, Extensive Livestock Industry Centre, Armidale, NSW, Australia.
V H OddyNSW Department of Primary Industries, Extensive Livestock Industry Centre, Armidale, NSW, Australia.
New South Wales Department of Primary Industries · AUAGRF Ltd · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRuminant livestock are a major contributor to Australian agricultural sector carbon emissions. Variation in methane (CH4) produced from enteric microbial fermentation of feed in the reticulo-rumen of sheep differs with different digestive functions.

methodWe isolated rumen epithelium enzymatically to extract membrane and cytosol proteins from sheep with high (H) and low (L) CH4 emission. Protein abundance was quantified using SWATH-mass spectrometry.

resultsThe research found differences related to the metabolism of glucose, lactate and processes of cell defence against microbes in sheep from each phenotype. Enzymes in the methylglyoxal pathway, a side path of glycolysis, resulting in D-lactate production, differed in abundance. In the H CH4 rumen epithelium the enzyme hydroxyacylglutathione hydrolase (HAGH) was 2.56 fold higher in abundance, whereas in the L CH4 epithelium lactate dehydrogenase D (LDHD) was 1.93 fold higher. Malic enzyme 1 which converts D-lactate to pyruvate via the tricarboxylic cycle was 1.57 fold higher in the L CH4 phenotype. Other proteins that are known to regulate cell defence against microbes had differential abundance in the epithelium of each phenotype.

conclusionDifferences in the abundance of enzymes involved in the metabolism of glucose were associated with H and L CH4 phenotype sheep. Potentially this represents an opportunity to use protein markers in the rumen epithelium to select low CH4 emitting sheep.

Indexed as

Membrane ProteinsRumenAnimalsAustraliaCarbonCytosolDietEpitheliumFermentationGlucoseLactate DehydrogenasesLactatesMethanePhenotypePyruvaldehydePyruvatesCarbonGlucoseLactate DehydrogenasesLactatesMembrane ProteinsMethanePyruvaldehydePyruvates

Identifiers

PMID36256644
PMCPMC9578583
OpenAlexW4306711059

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.