Evidence map›Paper›PMID 36256515›Full record

ArticleEMBO reports2022

DDX60 selectively reduces translation off viral type II internal ribosome entry sites.

Mohammad Sadic, William M Schneider, Olga Katsara, Gisselle N Medina, Ashley Fisher, Aishwarya Mogulothu, Yingpu Yu, Meigang Gu, Teresa de Los Santos, Robert J Schneider and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Ins and outs of IRES elements: function and significance.Biochemical Society transactions · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Mohammad SadicNYU Grossman School of Medicine, New York, NY, USA.ORCID 0000-0002-4728-8908
William M SchneiderThe Rockefeller University, New York, NY, USA.
Olga KatsaraNYU Grossman School of Medicine, New York, NY, USA.
Gisselle N MedinaPlum Island Animal Disease Center, ARS, USDA, Greenport, NY, USA.
Ashley FisherNYU Grossman School of Medicine, New York, NY, USA.
Aishwarya MogulothuPlum Island Animal Disease Center, ARS, USDA, Greenport, NY, USA.
Yingpu YuThe Rockefeller University, New York, NY, USA.
Meigang GuThe Rockefeller University, New York, NY, USA.
Teresa de Los SantosPlum Island Animal Disease Center, ARS, USDA, Greenport, NY, USA.ORCID 0000-0003-3075-4316
Robert J SchneiderNYU Grossman School of Medicine, New York, NY, USA.ORCID 0000-0001-5807-5564
Meike DittmannNYU Grossman School of Medicine, New York, NY, USA.ORCID 0000-0002-1741-7916
New York University · USRockefeller University · USCenter for Grain and Animal Health Research · USPlum Island Animal Disease Center · USUniversity of Connecticut · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
Medical Scientist Research Service AwardT32GM136573 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SULMAN, ERIK · 2020 to 2024
$6.8M
Type I interferon-stimulated genes and the antiviral immune responseR01AI091707 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2011 to 2020
$5.5M
DAP5-dependent translational control and breast cancer metastasisR01CA248397 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SCHNEIDER, ROBERT JAY · 2020 to 2024
$2.5M
ELF1 - Molecular mechanisms of a novel transcription factor with broad antiviral activityR01AI143639 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 2019 to 2023
$2.5M
SERPINs as a novel family of innate antiviral molecules - Resubmission - 1R21AI139374 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DITTMANN, MEIKE · 2019 to 2020
$466k
Hepatitis C virus and the innate immune response: from transcriptome to functionF32DK095666 · NIDDK · ROCKEFELLER UNIVERSITY · PI SCHNEIDER, WILLIAM MATTHEW · 2012 to 2014
$156k
NCI NIH HHS R01 CA248397NIAID NIH HHS R01 AI091707NIAID NIH HHS R01 AI143639NIAID NIH HHS R21 AI139374NIAID NIH HHS T32 AI007647NIDDK NIH HHS F32 DK095666NIGMS NIH HHS T32 GM007308NIGMS NIH HHS T32 GM136573
6 · The paper itself

Abstract

Co-opting host cell protein synthesis is a hallmark of many virus infections. In response, certain host defense proteins limit mRNA translation globally, albeit at the cost of the host cell's own protein synthesis. Here, we describe an interferon-stimulated helicase, DDX60, that decreases translation from viral internal ribosome entry sites (IRESs). DDX60 acts selectively on type II IRESs of encephalomyocarditis virus (EMCV) and foot and mouth disease virus (FMDV), but not by other IRES types or by 5' cap. Correspondingly, DDX60 reduces EMCV and FMDV (type II IRES) replication, but not that of poliovirus or bovine enterovirus 1 (BEV-1; type I IRES). Furthermore, replacing the IRES of poliovirus with a type II IRES is sufficient for DDX60 to inhibit viral replication. Finally, DDX60 selectively modulates the amount of translating ribosomes on viral and in vitro transcribed type II IRES mRNAs, but not 5' capped mRNA. Our study identifies a novel facet in the repertoire of interferon-stimulated effector genes, the selective downregulation of translation from viral type II IRES elements.

Indexed as

InterferonsInternal Ribosome Entry SitesInterferonsInternal Ribosome Entry SitesDExDH box helicaseinterferonIRESprotein synthesis

Identifiers

PMID36256515
PMCPMC9724679
OpenAlexW4306732182

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.