Evidence map›Paper›PMID 36256477›Full record

ArticleJCI insight2022

Culture media composition influences patient-derived organoid ability to predict therapeutic responses in gastrointestinal cancers.

Tara L Hogenson, Hao Xie, William J Phillips, Merih D Toruner, Jenny J Li, Isaac P Horn, Devin J Kennedy, Luciana L Almada, David L Marks, Ryan M Carr and 29 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 58 citations in OpenAlex.

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  20. Organoid-based precision medicine in pancreatic cancer.United European gastroenterology journal · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 6 institutions in 2 countries.

Tara L HogensonSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Hao XieDepartment of Gastrointestinal Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
William J PhillipsSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Merih D TorunerSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Jenny J LiDivision of Medical Oncology, Department of Oncology.
Isaac P HornSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Devin J KennedySchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Luciana L AlmadaSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
David L MarksSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Ryan M CarrSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Murat TorunerSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Ashley N SigafoosSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Amanda N Koenig-KappesSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Rachel Lo OlsonSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Ezequiel J TolosaSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Cheng ZhangDepartment of Pharmacology, and.
Hu LiDepartment of Pharmacology, and.
Jason D DolesDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.
Jonathan BleekerSanford Research, Oncology, Sanford Health, Sioux Falls, South Dakota, USA.
Michael T BarrettDivision of Hematology/Oncology, Mayo Clinic, Phoenix, Arizona, USA.
James H BoyumDepartment of Radiology.
Benjamin R KippDepartment of Laboratory Medicine and Pathology.
Amit MahipalDivision of Medical Oncology, Department of Oncology.
Joleen M HubbardDivision of Medical Oncology, Department of Oncology.
Temperance J Scheffler HansonDivision of Medical Oncology, Department of Oncology.
Gloria M PetersenDivision of Epidemiology, Department of Quantitative Health Sciences.
Surendra DasariDivision of Computational Biology, Department of Quantitative Health Sciences, and.
Ann L ObergDivision of Computational Biology, Department of Quantitative Health Sciences, and.
Mark J TrutyDepartment of Surgery, Mayo Clinic, Rochester, Minnesota, USA.
Rondell P GrahamDivision of Anatomic Pathology, Mayo Clinic, Rochester, Minnesota, USA.
Michael J LevyDivision of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Mojun ZhuDivision of Medical Oncology, Department of Oncology.
Daniel D BilladeauSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Alex A AdjeiDivision of Medical Oncology, Department of Oncology.
Nelson DusettiCancer Research Center of Marseille (CRCM), INSERM U1068, CNRS UMR 7258, Aix-Marseille Université and Institut Paoli-Calmettes, Parc Scientifique et Technologique de Luminy, Marseille, France.
Juan L IovannaCancer Research Center of Marseille (CRCM), INSERM U1068, CNRS UMR 7258, Aix-Marseille Université and Institut Paoli-Calmettes, Parc Scientifique et Technologique de Luminy, Marseille, France.
Tanios S Bekaii-SaabDivision of Hematology/Oncology, Mayo Clinic, Phoenix, Arizona, USA.
Wen Wee MaDivision of Medical Oncology, Department of Oncology.
Martin E Fernandez-ZapicoSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, Minnesota, USA.
Mayo Clinic · USQuantitative BioSciences · USCentre National de la Recherche Scientifique · FRMayo Clinic in Florida · USMoffitt Cancer Center · USSanford Health · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI AKHILESH PANDEY · 1985 to 2026
$151.3M
Unfolded Protein Response and Autophagy in T Helper Cell Effector FunctionP20GM121176 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Monica Rosas Lemus · 2017 to 2026
$24.9M
New Therapuetics for Pancreatic CancerR01CA265050 · NCI · MAYO CLINIC ROCHESTER · PI Mitesh Borad, Martin Ernesto Fernandez-Zapico · 2022 to 2026
$3.0M
NCI NIH HHS P30 CA015083NCI NIH HHS R01 CA265050NIGMS NIH HHS P20 GM121176
6 · The paper itself

Abstract

BACKGROUNDA patient-derived organoid (PDO) platform may serve as a promising tool for translational cancer research. In this study, we evaluated PDO's ability to predict clinical response to gastrointestinal (GI) cancers.METHODSWe generated PDOs from primary and metastatic lesions of patients with GI cancers, including pancreatic ductal adenocarcinoma, colorectal adenocarcinoma, and cholangiocarcinoma. We compared PDO response with the observed clinical response for donor patients to the same treatments.RESULTSWe report an approximately 80% concordance rate between PDO and donor tumor response. Importantly, we found a profound influence of culture media on PDO phenotype, where we showed a significant difference in response to standard-of-care chemotherapies, distinct morphologies, and transcriptomes between media within the same PDO cultures.CONCLUSIONWhile we demonstrate a high concordance rate between donor tumor and PDO, these studies also showed the important role of culture media when using PDOs to inform treatment selection and predict response across a spectrum of GI cancers.TRIAL REGISTRATIONNot applicable.FUNDINGThe Joan F. & Richard A. Abdoo Family Fund in Colorectal Cancer Research, GI Cancer program of the Mayo Clinic Cancer Center, Mayo Clinic SPORE in Pancreatic Cancer, Center of Individualized Medicine (Mayo Clinic), Department of Laboratory Medicine and Pathology (Mayo Clinic), Incyte Pharmaceuticals and Mayo Clinic Hepatobiliary SPORE, University of Minnesota-Mayo Clinic Partnership, and the Early Therapeutic program (Department of Oncology, Mayo Clinic).

Indexed as

Gastrointestinal NeoplasmsPancreatic NeoplasmsCulture MediaHumansOrganoidsCulture MediaColorectal cancerDrug therapyLiver cancerOncologyTherapeutics

Identifiers

PMID36256477
PMCPMC9746806
OpenAlexW4306708184

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.