Evidence map›Paper›PMID 36255645›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Immunoprecipitation of HDAC6 and Interacting Proteins.

Longlong Wang, Jacint Sanchez, Daniel Hess, Patrick Matthias

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Longlong WangFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Jacint SanchezFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Daniel HessFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Patrick MatthiasFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland. patrick.matthias@fmi.ch.
Friedrich Miescher Institute · CHUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lysine deacetylase HDAC6 has unique structural and functional properties: It contains tandem catalytic domains that can deacetylate a variety of proteins and a zinc finger domain that binds ubiquitin. HDAC6 has been implicated in a variety of biological processes, normal or pathological, such as cellular motility, stress response, cancer, neurodegeneration, or viral infection. Due to this, HDAC6 is considered an attractive therapeutic target, and there is a major interest to identify small molecule inhibitors. To gain a mechanistic understanding of how HDAC6 impacts these different biological processes, there is a continued need to discover additional substrates as well as interacting proteins in different paradigms. One approach to achieve this is to perform HDAC6 immunoprecipitations to identify partner proteins. We describe here our optimized protocols to immunoprecipitate HDAC6 with the goal to identify or validate interacting proteins.

Indexed as

Histone DeacetylasesLysineHistone Deacetylase 6Histone Deacetylase InhibitorsImmunoprecipitationUbiquitinHistone Deacetylase 6Histone Deacetylase InhibitorsHistone DeacetylasesLysineUbiquitinHDAC6ImmunoblottingImmunoprecipitationInteracting partnersMass SpectrometryUbiquitin

Identifiers

PMID36255645
OpenAlexW4306732456

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.