Evidence map›Paper›PMID 36255630›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Assessment of HDAC Inhibitor-Induced Endoplasmic Reticulum (ER) Stress.

Melisa Halilovic, Lisa Marx-Blümel, Christian Marx, Katrin Buder, James F Beck, Jürgen Sonnemann

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Melisa HalilovicLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Lisa Marx-BlümelDepartment of Pediatric Hematology and Oncology, Children's Clinic, Jena University Hospital, Jena, Germany.
Christian MarxCenter for Pandemic Vaccines and Therapeutics (ZEPAI), Paul Ehrlich Institute (PEI), Langen, Germany.
Katrin BuderLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
James F BeckDepartment of Pediatric Hematology and Oncology, Children's Clinic, Jena University Hospital, Jena, Germany.
Jürgen SonnemannDepartment of Pediatric Hematology and Oncology, Children's Clinic, Jena University Hospital, Jena, Germany. juergen.sonnemann@med.uni-jena.de.
Jena University Hospital · DELeibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEPaul Ehrlich Institut · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The endoplasmic reticulum (ER) is a multifunctional cell organelle which is important for the folding and processing of proteins. Different endogenous and exogenous factors can disturb the ER homeostasis, causing ER stress and activating the unfolded protein response (UPR) to remove misfolded proteins and aggregates. ER stress and the UPR are associated with several human diseases, such as diabetes, Alzheimer's or Parkinson's disease, and cancer. Histone deacetylase inhibitors (HDACi) are used to treat cancer and were shown to induce ER stress/to modulate the UPR, although the exact mechanism is not fully understood and needs further research. Several approaches to monitoring ER stress exist. Here we describe methods including qPCR, Western blot, transmission electron microscopy, and fluorescence microscopy to analyze changes in mRNA and protein expression levels as well as defects in ER structures after HDAC inhibitor-induced ER stress.

Indexed as

Endoplasmic Reticulum StressHistone Deacetylase InhibitorsEndoplasmic ReticulumHumansRNA, MessengerUnfolded Protein ResponseHistone Deacetylase InhibitorsRNA, MessengerElectron microscopyEndoplasmic reticulum (ER) stressFluorescence microscopyHDACiHDAC inhibitorqPCRUnfolded protein response (UPR)Western blot

Identifiers

PMID36255630
OpenAlexW4306733066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.