Evidence map›Paper›PMID 36255625›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Synthesis, Biochemical, and Cellular Evaluation of HDAC6 Targeting Proteolysis Targeting Chimeras.

Salma Darwish, Tino Heimburg, Johannes Ridinger, Daniel Herp, Matthias Schmidt, Christophe Romier, Manfred Jung, Ina Oehme, Wolfgang Sippl

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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Salma DarwishDepartment of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Halle/Saale, Germany.
Tino HeimburgDepartment of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Halle/Saale, Germany.
Johannes RidingerHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg, Germany.ORCID 0000-0003-1341-7721
Daniel HerpInstitute of Pharmaceutical Sciences, University of Freiburg, Freiburg, Germany.
Matthias SchmidtDepartment of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Halle/Saale, Germany.ORCID 0000-0003-3876-2695
Christophe RomierDépartement de Biologie Structurale Intégrative, Université de Strasbourg, CNRS, INSERM, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Illkirch Cedex, France.ORCID 0000-0002-3680-935X
Manfred JungInstitute of Pharmaceutical Sciences, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-6361-7716
Ina OehmeHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg, Germany.ORCID 0000-0002-0827-2356
Wolfgang SipplDepartment of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Halle/Saale, Germany. wolfgang.sippl@pharmazie.uni-halle.de.ORCID 0000-0002-5985-9261

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone deacetylases are considered promising epigenetic targets for chemical protein degradation due to their diverse roles in physiological cellular functions and in the diseased state. Proteolysis-targeting chimeras (PROTACs) are bifunctional molecules that hijack the cell's ubiquitin-proteasome system (UPS). One of the promising targets for this approach is histone deacetylase 6 (HDAC6), which is highly expressed in several types of cancers and is linked to the aggressiveness of tumors. In the present work, we describe the synthesis of HDAC6 targeting PROTACs based on previously synthesized benzohydroxamates selectively inhibiting HDAC6 and how to assess their activities in different biochemical in vitro assays and in cellular assays. HDAC inhibition was determined using fluorometric assays, while the degradation ability of the PROTACs was assessed using western blot analysis.

Indexed as

NeoplasmsProteasome Endopeptidase ComplexChimeraHistone Deacetylase 6Histone DeacetylasesHumansProteolysisUbiquitinUbiquitin-Protein LigasesHDAC6 protein, humanHistone Deacetylase 6Histone DeacetylasesProteasome Endopeptidase ComplexUbiquitinUbiquitin-Protein LigasesEpigenetic proteinsHistone deacetylase 6Proteolysis-targeting chimeras

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.