Evidence map›Paper›PMID 36255229›Full record

ArticleDevelopment (Cambridge, England)2022

Progression of the pluripotent epiblast depends upon the NMD factor UPF2.

Jennifer N Chousal, Abhishek Sohni, Kristoffer Vitting-Seerup, Kyucheol Cho, Matthew Kim, Kun Tan, Bo Porse, Miles F Wilkinson, Heidi Cook-Andersen

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Jennifer N ChousalDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-8725-6142
Abhishek SohniDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-1512-5872
Kristoffer Vitting-SeerupThe Bioinformatics Centre, Department of Biology and Biotech Research & Innovation Centre, University of Copenhagen, 2200 Copenhagen, Denmark.ORCID 0000-0002-6450-0608
Kyucheol ChoDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Matthew KimDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-4007-8999
Kun TanDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-8567-7795
Bo PorseThe Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, DK2200 Copenhagen, Denmark.ORCID 0000-0001-6043-0844
Miles F WilkinsonDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-6416-3058
Heidi Cook-AndersenDepartment of Obstetrics, Gynecology and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-3916-5120
University of California San Diego · USUniversity of Copenhagen · DK

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007198 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHI, NEIL C, INSEL, PAUL A · 1985 to 2024
$29.3M
TRAINING IN REPRODUCTIVE SCIENCEST32HD007203 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PAMELA L MELLON · 1988 to 2026
$4.8M
The Role of NMD in Embryonic DevelopmentR01HD093846 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WILKINSON, MILES FROME · 2018 to 2022
$2.3M
Mechanisms driving the transition from oocyte to embryo: The role of the mRNA decay activator ZFP36L2.R01GM124519 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COOK-ANDERSEN, HEIDI · 2018 to 2022
$1.7M
NICHD NIH HHS R01 HD093846NICHD NIH HHS T32 HD007203NIGMS NIH HHS R01 GM124519NIGMS NIH HHS T32 GM007198NIH HHS R01 HD093846
6 · The paper itself

Abstract

Nonsense-mediated RNA decay (NMD) is a highly conserved RNA turnover pathway that degrades RNAs harboring in-frame stop codons in specific contexts. Loss of NMD factors leads to embryonic lethality in organisms spanning the phylogenetic scale, but the mechanism remains unknown. Here, we report that the core NMD factor, UPF2, is required for expansion of epiblast cells within the inner cell mass of mice in vivo. We identify NMD target mRNAs in mouse blastocysts - both canonical and alternatively processed mRNAs - including those encoding cell cycle arrest and apoptosis factors, raising the possibility that NMD is essential for embryonic cell proliferation and survival. In support, the inner cell mass of Upf2-null blastocysts rapidly regresses with outgrowth and is incompetent for embryonic stem cell derivation in vitro. In addition, we uncovered concordant temporal- and lineage-specific regulation of NMD factors and mRNA targets, indicative of a shift in NMD magnitude during peri-implantation development. Together, our results reveal developmental and molecular functions of the NMD pathway in the early embryo.

Indexed as

Nonsense Mediated mRNA DecayRNAAnimalsGerm LayersMicePhylogenyRNA-Binding ProteinsRNA, MessengerRNARNA-Binding ProteinsRNA, MessengerUpf2 protein, mouseBlastocystEpiblastNonsense-mediated RNA decayRNA decay

Identifiers

PMID36255229
PMCPMC9687065
OpenAlexW4306729997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.